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Commits

Commits on May 3, 2016

bump version after creating 3.3 branch
d.tenenbaum
committed
Bump versions prior to creation of 3.3 branch
d.tenenbaum
committed

Commits on Jan 20, 2016

replace overkill use of rdapply/RDApplyParams by simpler code
[email protected]
committed

Commits on Oct 26, 2015

bug fix in 'reads2pairs' regarding chromosomes/contigs without any reads
m.hummel
committed

Commits on Oct 13, 2015

Bumped version number of all packages after creation of 3.2 branch.
d.tenenbaum
committed
Bumped versions of all packages prior to creating 3.2 branch.
d.tenenbaum
committed

Commits on Sep 8, 2015

correction in html report text
m.hummel
committed

Commits on Sep 4, 2015

updated NEWS file
m.hummel
committed
new parameter to chrom.barplot; bug fix regarding Offset in TEQCreport
m.hummel
committed

Commits on Apr 16, 2015

Bump versions in trunk after creation of 3.1 branch.
d.tenenbaum
committed
Bump versions prior to creating 3.1 branch.
d.tenenbaum
committed

Commits on Nov 11, 2014

updated links to Rle functions in documentation
m.hummel
committed

Commits on Oct 13, 2014

Bumping versions after creating 3.0 release branch.
d.tenenbaum
committed
Bump package versions prior to creating the 3.0 branch.
d.tenenbaum
committed

Commits on Sep 12, 2014

but fixes in .coverage.hist and htmlDuplicatesBarplot
m.hummel
committed

Commits on Sep 4, 2014

bug fix in 'coverage.hist': coverage outlier values are removed from the histogram if 'outline=FALSE', but cumulative base fractions are now still calculated based on the complete coverage data
m.hummel
committed

Commits on Jun 25, 2014

added option 'covthreshold' as in 'coverage.hist' also to 'TEQCreport'
m.hummel
committed

Commits on Jun 5, 2014

- check of file type of 'readsfile' in 'get.reads'
m.hummel
committed

Commits on Apr 11, 2014

Second version bump after creating 2.14 release branch.
d.tenenbaum
committed
First version bump prior to creating 2.14 branch.
d.tenenbaum
committed

Commits on Mar 4, 2014

modify to new biocViews to DESCRIPTION file
s.arora
committed

Commits on Nov 29, 2013

changed mail address
m.hummel
committed

Commits on Nov 1, 2013

rename inst/doc to vignettes and bump version
d.tenenbaum
committed

Commits on Oct 14, 2013

bump version after release branch has been created
d.tenenbaum
committed
bump versions prior to creating BioC 2.13 branch
d.tenenbaum
committed

Commits on Sep 13, 2013

Use [ instead of deprecated seqselect().
[email protected]
committed

Commits on Aug 14, 2013

added citation to IRanges paper in vignette
m.hummel
committed

Commits on Aug 9, 2013

added IRanges citation
m.hummel
committed

Commits on Aug 8, 2013

fix in package version numbering and example in multiTEQCreport.Rd
m.hummel
committed

Commits on Jul 23, 2013

new function multiTEQCreport for creating html report for multiple samples
m.hummel
committed

Commits on Jul 2, 2013

important bug fix in coverage.target()
m.hummel
committed

Commits on May 29, 2013

improved coverage.hist
m.hummel
committed

Commits on Apr 3, 2013

Bump y in version x.y.z to odd number in devel
d.tenenbaum
committed
bump y of x.y.z version number for BioC 2.12 release
d.tenenbaum
committed

Commits on Jan 8, 2013

corrected DESCRIPTION and NAMESPACE
m.hummel
committed