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Commits on Oct 10, 2024

• bump go

  will-rowe

  committed
  ad47f17

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• replace with zlib

  will-rowe

  committed
  f9c3485

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• replace with zlib

  will-rowe

  committed
  3562662

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• replace

  will-rowe

  committed
  0cdd533

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Commits on Aug 18, 2020

• Update go.mod

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  yipal

  committed
  d966d87

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Commits on Aug 17, 2020

• cmd/bio-bam-sort: fix bio-bam-sort -sam documentation

  Show description for aeac8f7
  

  demetrin

  authored and

  Alexander Yip

  committed
  aeac8f7

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• encoding/bam: add sharded bam reader for adjacent record pairs

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  demetrin

  authored and

  Alexander Yip

  committed
  eb33ecf

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• bio/pileup: fixit: LoadFa update

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  Christopher Chang

  authored and

  Alexander Yip

  committed
  8596d41

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• bio/encoding/fasta: fixit: add support for BAM-friendly fasta load

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  Christopher Chang

  authored and

  Alexander Yip

  committed
  511e4bd

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• bio/encoding/bamprovider: deterministic BoundedPairIterator

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  Christopher Chang

  authored and

  Alexander Yip

  committed
  4d67c1a

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• bio/encoding/bam: fix gbai byte-based sharding

  Show description for 30936ae
  

  Christopher Chang

  authored and

  Alexander Yip

  committed
  30936ae

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• bio/spamtools/pileup: deduplicate open-sourced code

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  Christopher Chang

  authored and

  Alexander Yip

  committed
  c8261db

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• fragments: allow optional larger field read buffers

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  josh-newman

  authored and

  Alexander Yip

  committed
  183e47e

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Commits on May 2, 2020

• bio/pileup: migrate everything else

  Show description for 5fd533b
  

  Christopher Chang

  committed
  5fd533b

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• cmd/bio-pileup: command-line parsing skeleton

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  Christopher Chang

  committed
  60856b7

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• pileupsnp: fix misuse of OverlapByID

  Show description for 5d2430c
  

  Christopher Chang

  committed
  5d2430c

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• bio/encoding/bamprovider: prohibit Split*Coords + nonzero Padding

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  Christopher Chang

  committed
  5f6d17e

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• go: add onnx module, update gogo/protobuf and dependencies

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  Senthil Krishnamurthy

  authored and

  Christopher Chang

  committed
  0d91546

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• bio/encoding/fasta: introduce eager indexed reader

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  josh-newman

  authored and

  Christopher Chang

  committed
  24f532a

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• bio/encoding/fasta: add optional sequence cleaning

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  josh-newman

  authored and

  Christopher Chang

  committed
  447216d

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• bio/encoding/fasta: refactor

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  josh-newman

  authored and

  Christopher Chang

  committed
  defe8d0

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Commits on Mar 3, 2020

• Update grailbio/hts in go.mod

  

  Siddhartha Bagaria

  committed
  942f7ee

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• fragments: fix cgo vanadium runtime dependency

  Show description for 60bea17
  

  josh-newman

  authored and

  Siddhartha Bagaria

  committed
  60bea17

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• github.com/grailbio/bio: work around import error

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  josh-newman

  authored and

  Siddhartha Bagaria

  committed
  38273fb

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• go/bio/util/distance: use sync.Pool to manage matrices in Levenshtein

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  Jonathan Toung

  authored and

  Siddhartha Bagaria

  committed
  0393c1f

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• cmd/bio-mark-duplicates: handle mate of read from high coverage region properly

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  akokate

  authored and

  Siddhartha Bagaria

  committed
  8bc8c51

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• bio-mark-duplicates: fix bug in depth counter

  Show description for 02ecaf7
  

  Alexander Yip

  authored and

  Siddhartha Bagaria

  committed
  02ecaf7

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• bio-mark-duplicates: adds an option to filter shards based on max per base coverage depth

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  akokate

  authored and

  Siddhartha Bagaria

  committed
  2fa5da6

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• bio/interval: add EndpointsByName method

  Show description for b8949cf
  

  Christopher Chang

  authored and

  Siddhartha Bagaria

  committed
  b8949cf

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• bio/interval: add RefNameSet method

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  Christopher Chang

  authored and

  Siddhartha Bagaria

  committed
  3b525c9

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• doppelmark: move to its own directory in github

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  Alexander Yip

  authored and

  Siddhartha Bagaria

  committed
  fe86e30

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• github.com/grailbio: format Python code with black

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  josh-newman

  authored and

  Siddhartha Bagaria

  committed
  272c447

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• bio-mark-duplicates: add open source version

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  Alexander Yip

  authored and

  Siddhartha Bagaria

  committed
  409282a

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• bio-mark-duplicates: resurrect old optical duplicate code

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  Alexander Yip

  authored and

  Siddhartha Bagaria

  committed
  b9b40ab

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• cmd/bio-metrics: add and update metrics for linear amplication

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  kshashidharGB

  authored and

  Siddhartha Bagaria

  committed
  e049cbe

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