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Python 10 11 Updated Jun 29, 2023

Advanced Python Mastery (course by @dabeaz)

Python 12,241 2,069 Updated Oct 22, 2025

A markup-based typesetting system that is powerful and easy to learn.

Rust 47,959 1,310 Updated Nov 12, 2025
Jupyter Notebook 9 Updated Jul 9, 2023

Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

Python 21 8 Updated Oct 24, 2025

Somatic structural variant caller for long-read data

Python 83 9 Updated Sep 24, 2025

Webserver for Planemo Training Development Kit

Python 4 2 Updated May 8, 2024

Clock using time quotes from the literature, based on the work of Jaap Meijers

R 684 125 Updated Mar 28, 2025

Tiling PCR primer scheme definitions

9 4 Updated Sep 4, 2024

A tool to create visual HTML reports from collections of CSV/TSV tables

Rust 616 38 Updated Nov 10, 2025

Carbon Language's main repository: documents, design, implementation, and related tools. (NOTE: Carbon Language is experimental; see README)

C++ 33,447 1,518 Updated Nov 12, 2025

A collection of modern/faster/saner alternatives to common unix commands.

32,567 816 Updated Sep 10, 2024

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.

Ruby 91 56 Updated Nov 12, 2025

Galaxy Workflows maintained by the Intergalactic Workflow Commission

Vue 42 84 Updated Nov 12, 2025

Matrix Corporal: reconciliator and gateway for a managed Matrix server

Go 153 15 Updated Sep 20, 2025

A curated list of awesome public Galaxy histories

1 Updated Jun 19, 2021

A collection of Galaxy-related training material

HTML 344 1,015 Updated Nov 12, 2025

ENA upload cli - script your Open Data upload to the European Nucleotide Archive

Python 28 17 Updated Oct 20, 2025
Python 9 2 Updated Apr 14, 2021

Tool Shed repositories maintained by the Intergalactic Utilities Commission

HTML 182 486 Updated Nov 12, 2025

Data intensive science for everyone.

Python 1,657 1,102 Updated Nov 12, 2025

HyPhy: Hypothesis testing using Phylogenies

HyPhy 245 69 Updated Nov 10, 2025

Collection of scripts for automated SARS-CoV-2 genome surveillance.

Python 23 8 Updated Sep 19, 2023

Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.

Python 19 8 Updated Dec 13, 2021

Python library for RO-Crate

Python 77 34 Updated Nov 3, 2025

Lifterover copy number segments in whole

Python 23 4 Updated Feb 6, 2024

Simple, lightweight, and magic-free static site/blog generator for Python coders

Python 1,861 304 Updated Mar 4, 2023

This not my project, just an old fork. Upstream is here

Rust 8 Updated May 4, 2019

Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

Jupyter Notebook 127 77 Updated Feb 3, 2023
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