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Commits on Oct 28, 2025

• Merge pull request #22 from wslh-bio/dev-sample-name-comparison-fix

  AbigailShockey

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Commits on Oct 17, 2025

• Update version number

  AbigailShockey

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  94acbe2

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• Update version number

  AbigailShockey

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  5073bf6

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• Remove gzipped file options

  AbigailShockey

  committed
  cf7fa86

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Commits on Oct 16, 2025

• Change code for removal of fasta file extensions

  AbigailShockey

  committed
  b81f101

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Commits on Sep 23, 2025

• Merge pull request #21 from wslh-bio/dev-no_sample_count-fix

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  AbigailShockey

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  5886190

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• Update version number

  AbigailShockey

  authored
  bfc773d

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• Change SAMPLE_COUNT.out to ch_for_count

  AbigailShockey

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  faf69b3

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Commits on Aug 13, 2025

• Merge pull request #19 from wslh-bio/dev-SNP_excluded_files-4.1.0

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  AbigailShockey

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  74cd824

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Commits on Jul 28, 2025

• Fix delimiter

  AbigailShockey

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  1941895

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Commits on Jul 25, 2025

• Fix version number

  AbigailShockey

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  d737ed9

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• Merge pull request #20 from wslh-bio/dev-retry-and-ignore

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  AbigailShockey

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  eca3593

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Commits on Jul 23, 2025

• Add lines to remove .contigs and .ref from sample names

  AbigailShockey

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  c1ff860

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Commits on Jul 22, 2025

• Fix alignment_based description

  AbigailShockey

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  438713a

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• change error strategy

  AbigailShockey

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  0b18439

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Commits on Jul 21, 2025

• Fix df name and remove extra column in join_dfs_with_quast()

  AbigailShockey

  committed
  09c78c8

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• Restore cluster coverage code and add logging

  AbigailShockey

  committed
  c55eaf1

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• Restore parsnp aligner log summary and rename results module

  AbigailShockey

  committed
  921fea7

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Commits on May 22, 2025

• Added quotes to retry

  evagunawan

  committed
  710fa7e

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• Removed error ignore

  evagunawan

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  c499ba2

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• Updated version number

  evagunawan

  committed
  fae24e3

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• Added new max retries as well as new errorStrat

  evagunawan

  committed
  8e935c0

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• Removed error ignore label

  evagunawan

  committed
  aff63c1

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Commits on May 21, 2025

• Added error ignore label to modeules

  evagunawan

  committed
  ea377a0

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Commits on Apr 18, 2025

• Removed not used library

  evagunawan

  committed
  0377fa5

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• Changed import order to match proper convention

  evagunawan

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  9ee47ef

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Commits on Mar 26, 2025

• Added logging information

  evagunawan

  committed
  53a3520

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Commits on Mar 25, 2025

• Added logging information

  evagunawan

  committed
  8f4beb9

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• Fixed error that lists everything included

  evagunawan

  committed
  b6e6901

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Commits on Feb 20, 2025

• Fixed input for iqtree since counting fasta is now using operator

  evagunawan

  committed
  10a2aea

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• Removed sample count module in lieu of count operator

  evagunawan

  committed
  a417939

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Commits on Feb 18, 2025

• Updated wrong naming convention

  evagunawan

  committed
  2057df7

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Commits on Feb 5, 2025

• Updated README to include empty sample notable files

  evagunawan

  committed
  9728a89

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Commits on Jan 23, 2025

• Added in operator to handle empty files

  evagunawan

  committed
  14026ba

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Commits on Jan 22, 2025

• Add snp matrix for test_full validation

  

  Abigail Shockey

  committed
  4710da2

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