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Commits on Nov 20, 2025

• Merge pull request #24 from wslh-bio/dev-update-final-report

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  dtlyfoung

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Commits on Nov 19, 2025

• Moved 'Primary Species' column

  dtlyfoung

  committed
  84bbffc

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• Added author to citations block

  dtlyfoung

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  5a56131

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• Updated results to report to match the latest release.

  dtlyfoung

  committed
  ff6b27f

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Commits on Nov 18, 2025

• Closed parentheses

  dtlyfoung

  committed
  08a70c7

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• Updated version

  dtlyfoung

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  dd82dfd

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• Updated version

  dtlyfoung

  committed
  3e0643a

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• Refactored primary species sanitization

  dtlyfoung

  committed
  fb85510

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• Added run_name

  dtlyfoung

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  a2efd63

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• Cleaned up comments

  dtlyfoung

  authored
  7b45d01

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• Added primary species sanitzation step to remove % and assign to a new column. Fixed typo.

  dtlyfoung

  authored
  54c3bf3

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• Added sample sanitization function to strip sample of delimiters if there is a match to internal sample naming convention

  dtlyfoung

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  292e40c

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• Moved run_name argument to where the other arguments are intialized

  dtlyfoung

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  ade08de

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• Added run ID to the final report

  dtlyfoung

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  995fb74

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• Added run_name as function argument

  dtlyfoung

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  b62b754

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• Added run_name

  dtlyfoung

  authored
  60b6f05

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• Added run_name as a parameter

  dtlyfoung

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  47aa63e

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Commits on Nov 3, 2025

• Merge pull request #23 from wslh-bio/dev-read-repair

  AbigailShockey

  authored
  4b6fb36

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• Fix typo

  AbigailShockey

  authored
  968ea8d

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Commits on Oct 27, 2025

• Add parameter-template.json

  AbigailShockey

  committed
  d226e85

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• Add healthomics capability

  AbigailShockey

  committed
  d2a5f57

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• Update version

  AbigailShockey

  authored
  048ca5d

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• Update output tree and version number

  AbigailShockey

  authored
  1f473ee

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• Remove single-end option and repair and change results module name

  AbigailShockey

  committed
  2c422fb

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Commits on Oct 21, 2025

• Merge pull request #22 from wslh-bio/dev-calcassemblyratio-fix

  AbigailShockey

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  32c2734

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Commits on Oct 20, 2025

• Update version and credits

  AbigailShockey

  authored
  5d97a99

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• Update version to 1.6.3

  AbigailShockey

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Commits on Sep 17, 2025

• Change path joining method to os.join

  AbigailShockey

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  b88dfcd

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Commits on Aug 18, 2025

• Merge pull request #21 from wslh-bio/bug-handle-missing-species-in-assembly-stats

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  dtlyfoung

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Commits on Aug 15, 2025

• Updated version

  dtlyfoung

  committed
  a0ff940

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• Updated version

  dtlyfoung

  committed
  bc8a4e8

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• Added more information to log

  dtlyfoung

  committed
  03e79fc

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• Write a placeholder GC content file for no species match in NCBI DB

  dtlyfoung

  committed
  45265d5

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• Write assembly ratio file with placeholder values if no match with NCBI DB

  dtlyfoung

  committed
  e8e56e8

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• Handle no genus_species match in NCBI DB

  dtlyfoung

  committed
  0949833

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