Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

Private, browser-based placement of genome sequences on phylogenetic trees using UShER.

AlphaFold 3 inference pipeline.

Follow up to Grace Blackwell's 661k dataset, for 2023

Empowering everyone to build reliable and efficient software.

Instantaneous Metagenome Taxonomic Profiling with MetaKSSD

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output inc…

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

Get, parse, and extract information from the SRA metadata files

TQSLE v1.0 released

Sparse InversE Covariance estimation for Ecological Association and Statistical Inference

CCLasso: Correlation Inference for Compositional Data through Lasso

K-mer substring space decomposition

parallelly sort columns

Ultra-fast de novo assembler using long noisy reads

Banded Striped DNA Sequence Alignment

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Co-phylog: an assembly-free phylogenomic approach for closely related organisms