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MetaKSSD Public
Instantaneous Metagenome Taxonomic Profiling with MetaKSSD
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public_kssd Public
K-mer substring space decomposition
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xxHash Public
Forked from Cyan4973/xxHashExtremely fast non-cryptographic hash algorithm
C Other UpdatedJan 14, 2025 -
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alphafold3 Public
Forked from google-deepmind/alphafold3AlphaFold 3 inference pipeline.
Python Other UpdatedNov 11, 2024 -
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rust Public
Forked from rust-lang/rustEmpowering everyone to build reliable and efficient software.
Rust Other UpdatedSep 2, 2024 -
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skani Public
Forked from bluenote-1577/skaniFast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
Rust MIT License UpdatedJul 14, 2024 -
sylph Public
Forked from bluenote-1577/sylphultrafast genome querying and taxonomic profiling for metagenomic samples by abundance-corrected minhash.
Rust MIT License UpdatedApr 26, 2024 -
pp-sketchlib Public
Forked from bacpop/pp-sketchlibLibrary of sketching functions used by PopPUNK
C++ Apache License 2.0 UpdatedApr 15, 2024 -
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second_challenge_evaluation Public
Forked from CAMI-challenge/second_challenge_evaluationRepository for codes, analyses and visualizations for the CAMI II challenges
HTML UpdatedSep 4, 2023 -
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co-phylog Public
Co-phylog: an assembly-free phylogenomic approach for closely related organisms
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awesome-chatgpt-prompts Public
Forked from f/awesome-chatgpt-promptsThis repo includes ChatGPT promt curation to use ChatGPT better.
Creative Commons Zero v1.0 Universal UpdatedDec 10, 2022 -
txt2onto Public
Forked from krishnanlab/txt2ontoCode for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 20, 2022 -
SRA_Metadata Public
Forked from linsalrob/SRA_MetadataGet, parse, and extract information from the SRA metadata files
Python MIT License UpdatedSep 20, 2022 -
shiptv Public
Forked from peterk87/shiptvStandalone HTML interactive phylogenetic tree visualization powered by Phylocanvas and Javascript
HTML Other UpdatedMay 13, 2021 -
SuiteSparse Public
Forked from DrTimothyAldenDavis/SuiteSparseThe official SuiteSparse library: a suite of sparse matrix algorithms authored or co-authored by Tim Davis, Texas A&M University
C Other UpdatedNov 18, 2020 -
NanoSim Public
Forked from bcgsc/NanoSimNanopore sequence read simulator
Python Other UpdatedSep 17, 2020 -
long-read-rna-pipeline Public
Forked from ENCODE-DCC/long-read-rna-pipelineENCODE long read RNA-seq pipeline
WDL MIT License UpdatedJul 10, 2020 -
kmer-cnt Public
Forked from lh3/kmer-cntCode examples of fast and simple k-mer counters for tutorial purposes
C++ MIT License UpdatedMar 10, 2020 -
tiny-test-data Public
Forked from roryk/tiny-test-dataSuper small biological datasets for unit testing
Python MIT License UpdatedNov 6, 2019 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedSep 28, 2019 -
murmur-random Public
Forked from b3nsn0w/murmur-randomDeterministic random generator powered by MurmurHash3
JavaScript MIT License UpdatedDec 5, 2018 -
hash-prospector Public
Forked from skeeto/hash-prospectorAutomated integer hash function discovery
C The Unlicense UpdatedSep 18, 2018 -
phyx Public
Forked from FePhyFoFum/phyxphylogenetics tools for linux (and other mostly posix compliant) computers
C++ GNU General Public License v3.0 UpdatedMay 28, 2018
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