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Commits on Mar 30, 2025

• Processing of bamfiles for MHCII (#49)

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Commits on Mar 29, 2025

• return to unspecified pysam

  riasc

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• Resolve Issues with MHCII typing and workflow with custom files (#48)

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Commits on Mar 12, 2025

• added note for relative paths in config

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Commits on Sep 2, 2024

• remove apptainer environment

  riasc

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• update description to similarity names

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• renamed protein and pathogen fields

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Commits on Aug 31, 2024

• updated scanexitron

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• commit badge

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• fork badge

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  16f93a0

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• corrected link

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• added some badges

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• release badge

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• corrected wrong badge link

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• added strand parameter (exitrons)

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  committed
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• changed configfile in linting to main config file - rather than the test configs

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• added strand parameter in exitron calling

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  committed
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• updated scanexitron, description,... prepare for v0.3.0

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  committed
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Commits on Aug 22, 2024

• added fix for v0.2.12

  riasc

  committed
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• updated valid alleles list

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Commits on Aug 20, 2024

• added badge for downloads

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Commits on Aug 2, 2024

• added changes to v0.2.11

  riasc

  committed
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• updated samtools as --o is required for transindel (introduced in samtools 1.16)

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Commits on Jul 9, 2024

• merge samples when combining m2 results

  riasc

  committed
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Commits on Jul 5, 2024

• distributed workfload for hlatyping

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Commits on Jun 27, 2024

• changes to speedup process

  riasc

  committed
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Commits on Jun 25, 2024

• resolved typo in log

  riasc

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• Error catching routines (#30)

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Commits on Jun 21, 2024

• Readgroup issue (#28)

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Commits on Jun 20, 2024

• Rule error hlatyping (#27)

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Commits on May 20, 2024

• restrict hlatyping to 64 threads

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• added info for v0.2.4

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• removed intermediate results in test results

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• code cleanup remove print

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• Spladder parallel (#20)

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