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Table 1 Repeat elements detected in the lungfish transcriptome.

From: The Lungfish Transcriptome: A Glimpse into Molecular Evolution Events at the Transition from Water to Land

 

number of elements

length occupied

percentage of sequence

Retroelements

3,918

1,408,371 bp

1.20%

 SINEs:

791

103,659 bp

0.09%

 LINEs:

2,668

1,178,516 bp

1.01%

 L2/CR1/Rex

2,118

883120 bp

0.76%

 R2/R4/NeSL

196

113911 bp

0.10%

 RTE/Bov-B

10

1,598 bp

0.00%

 L1/CIN4

344

179,887 bp

0.15%

 LTR elements:

459

126,196 bp

0.11%

 Gypsy/DIRS1

29

9,956 bp

0.01%

 Retroviral

429

116,103 bp

0.10%

DNA transposons

1,902

377,257

0.32%

 hobo-Activator

198

50,625

0.04%

 Tc1-IS630-Pogo

1,554

293,330

0.25%

Rolling-circles

0

0

0.00%

 Unclassified:

8

2,109 bp

0.00%

 Total interspersed repeats:

 

1,787,737 bp

1.53%

 Small RNA:

46

15,534 bp

0.01%

 Satellites:

5

412 bp

0.00%

 Simple repeats:

25,339

938,512 bp

0.80%

 Low complexity:

3,166

146,658 bp

0.13%

  1. Sequence repeats detected in the lungfish transcriptome by RepeatMasker 4.0.3, based on the vertebrate repeats database Dfam1.2. A total of 74,318 assembled transcripts were scanned, accounting for a total length of 116,965,448 bp; overall 2,886,461 bp, accounting for 2.47% of the entire assembled transcriptome, were masked.
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