Abstract
In this chapter we describe a discrete continuum hybrid method applied to two biological systems. The cells are modeled as discrete objects which are free to move in space (lattice-free), the forces which act on the cells are applied to their center of mass (center-based), and the cells interact with something represented as a continuum variable. Dictyostelium discoideum is the first system modeled by the method. The cells move and communicate with each other through a diffusible chemical. In the second system, scar tissue formation, the cells interact with the extracellular matrix which is represented as a continuous vector field.
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D. A. Brock, F. Buczynski, T. P. Spann, S. A. Wood, J. Cardelli, and R. H. Gomer. A Dictyostelium mutant with defective aggregate size determination. Development, 122:2569–2578, 1996.
P. Clark, P. Connolly, A. S. G. Curtis, and C. C. W. Wilkinson. Topographical control of cell behaviour. iii. multiple grooved substrata. Dev., 108:635–644, 1990.
R. A. F. Clark. Wound repair. Curr. Opin. Cell Biol., 1:1000–1008, 1989.
R. A. F. Clark. Wound repair overview and general considerations. In R. A. F. Clark, editor, The Molecular and Cellular Biology of Wound Repair, pages 3–50. Plenum Press, 2 edition, 1996.
R. A. F. Clark, L. D. Nielsen, M. P. Welch, and J. M. McPherson. Collagen matrices attenuate the collagen-synthetic response of cultured fibroblasts to TGF-β. J. Cell Sci., 108:1251–1261, 1995.
J. C. Dallon. Numerical aspects of discrete and continuum hybrid models in cell biology. Applied Numerical Mathematics, 32:137–159, 2000.
J. C. Dallon and H. G. Othmer. A discrete cell model with adaptive signalling for aggregation of Dictyostelium discoideum. Phil. Trans. Roy. Soc. London: Series B, 352(1357):391–417, 1997.
J. C. Dallon and H. G. Othmer. How cellular movement determines the collective force generated by the Dictyostelium discoideum slug. J. Theor. Biol., 231:203–222, 2004.
J. C. Dallon, J. A. Sherratt, P. K. Maini, and M. W. J. Ferguson. Biological implications of a discrete mathematical model for collagen deposition and alignment in dermal wound repair. IMA J. Math. Appl. Med. Biol., 17:379–393, 2000.
J. C. Dallon, W. Jang, and R. H. Gomer. Mathematically modeling the effects of counting factor (cf) in dictyostelium discoideum. Math. Med. Biol., 23:45.
J. C. Dallon, J. A. Sherratt, and P. K. Maini. Modeling the effects of transforming growth factor-β on extracellular matrix alignment in dermal wound repair. Wound Repair and Regeneration, 9(4):278–286, 2001.
R. Durrett and S. Levin. The importance of being discrete (and spatial). Theor. Popul. Biol., 46:363–394, 1994.
H. P. Ehrlich and T. M. Krummel. Regulation of wound healing from a connective tissue perspective. Wound Repair Regen, 4:203–210, April–June 1996.
R. Futrelle, J. Traut, and W. G. McKee. Cell behavior in Dictyostelium discoideum: preaggregation response to localized cyclic AMP pulses. J. Cell. Biol., 92:807–821, 1982.
M. R. Gibbons and D. W. Hewett. Characterization of the darwin direct implicit particle-in-cell mehod and resulting guidelines for operation. J. Comp. Phys., 130(1):54–66, 1997.
S. Guido and R. T. Tranquillo. A methodology for the systematic and quantitative study of cell contact guidance in oriented collagen gels. J. Cell Sci., 105:317–331, 1993.
R. W. Hockney and J. W. Eastwood. Computer Simulations Using Particles. Institute of Physics Publishing, 1988.
P. Hsieh and L. B. Chen. Behavior of cells seeded on isolated fibronectin matrices. J. Cell Biol., 96:1208–1217, 1983.
R. W. Jennings and T. K. Hunt. Overview of postnatal wound healing. In N. S. Adzick and M. T. Longaker, editors, Fetal Wound Healing, pages 25–52. Elsevier Science Publishing Company, 1992.
P. J. O’Rourke and J. U. Brackbill. On particle-grid interpolation and calculating chemistry in particle-in-cell methods. J. Comp. Phys., 109:37–52, 1993.
E. Palsson and H. G. Othmer. A model for individual and collective cell movement in dictyostelium discoideum. Proc. Nat. Acad. Sci. USA, 97:10448–10453, 2000.
C. S. Peskin and D. M. McQueen. Fluid dynamics of the heart and its valves. In H. G. Othmer, F. R. Adler, M. A. Lewis, and J. C. Dallon, editors, Case Studies in mathematical Modeling Ecology, Physiology, and Cell Biology. Prentice Hall, 1997.
T. Höfer, J. A. Sherratt, and P. K. Maini. Dictyostelium discoideum: cellular self-organization in an excitable biological medium. Proc. R. Soc. Lond. B, 259(1356):249–257, March 1995.
A. Ralston and P. Rabinowitz. A First Course in Numerical Analysis. McGraw Hill Book Company, New York, 1978.
C. Roisin-Bouffay, W. Jang, D. R. Caprette and R. H. Gomer. A precise group size in Dictyostelium is generated by a cell-counting factor modulating cell-cell adhesion. Molecular Cell, 6:953–959, October 2000.
F. M. Ross and P. C. Newell. Streamers: Chemotactic mutants of Dictyostelium discoideum with altered cyclic gmp metabolism. J. Gen. Microbiol., 127:339–350, 1981.
F. Siegert and C. J. Weijer. Digital image processing of optical density wave propagation in Dictyostelium discoideum and analysis of the effects of caffeine and ammonia. J. Cell Sci., 93:325–335, 1989.
C-H. Siu and R. K. Kamboj. Cell-cell adhesion and morphogenesis in Dictyostelium discoideum. Developmental Genetics, 11:277–387, 1990.
D. Skulsky, S. J. Zhou, and H. L. Schreyer. Application of a particle-in-cell method to solid mechanics. Comp. Phys. Commun, 87(1–2):236–252, 1995.
Y. Tang and H. G. Othmer. A G-protein-based model of adaptation in Dictyostelium discoideum. Math. Biosci., 120(1):25–76, March 1994.
M. Toda. Theory of nonlinear lattices, volume 20 of Springer series in solid-state sciences. Springer, 2 edition, 1989.
D. J. Whitby and M. W. J. Ferguson. The extracellular matrix of lip wounds in fetal, neonatal and adult mice. Dev., 112:651–668, 1991.
B. Wojciak-Stothard, M. Denyer, M. Mishra, and R. A. Brown. Adhesion orientation, and movement of cells cultured on ultrathin fibronectin fibers. In Vitro Cell. Devel. Biol., 33(2):110–117, 1997.
J. Xu and R. A. F. Clark. Extracellular matrix alters PDGF regulation of fibroblast integrins. J. Cell Biol., 132:239–249, 1996.
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© 2007 Birkhäuser Verlag Basel/Switzerland
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Dallon, J.C. (2007). Models with Lattice-free Center-based Cells Interacting with Continuum Environment Variables. In: Anderson, A.R.A., Chaplain, M.A.J., Rejniak, K.A. (eds) Single-Cell-Based Models in Biology and Medicine. Mathematics and Biosciences in Interaction. Birkhäuser, Basel. https://doi.org/10.1007/978-3-7643-8123-3_9
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DOI: https://doi.org/10.1007/978-3-7643-8123-3_9
Publisher Name: Birkhäuser, Basel
Print ISBN: 978-3-7643-8101-1
Online ISBN: 978-3-7643-8123-3
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Keywords
- Dictyostelium Discoideum
- Scar Tissue Formation
- Continuous Vector Field
- Continuum Environment
- Continuum Hybrid
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.