Rob Knight

Springer Nature Publications

• Article

  Enhancing untargeted metabolomics using metadata-based source annotation

  • Julia M. Gauglitz
  • Kiana A. West
  • Pieter C. Dorrestein

   in Nature Biotechnology

  7 July 2022

  
• Article

  Context-aware deconvolution of cell–cell communication with Tensor-cell2cell

  • Erick Armingol
  • Hratch M. Baghdassarian
  • Nathan E. Lewis

   in Nature Communications

  27 June 2022 Open Access

  
• Article

  Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS

  • Clarisse Marotz
  • Rebecca Molinsky
  • Ryan T. Demmer

   in npj Biofilms and Microbiomes

  20 April 2022 Open Access

  
• Article

  The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study)

  • Shiyu S. Bai-Tong
  • Megan S. Thoemmes
  • Sandra L. Leibel

   in Scientific Reports

  19 April 2022 Open Access

  
• Article

  Unlocking capacities of genomics for the COVID-19 response and future pandemics

  • Sergey Knyazev
  • Karishma Chhugani
  • Serghei Mangul

   in Nature Methods

  8 April 2022

  
• Article

  The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction

  • Niema Moshiri
  • Kathleen M. Fisch
  • Rob Knight

   in Scientific Reports

  24 March 2022 Open Access

  
• Article

  Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides

  • Gajender Aleti
  • Jordan N. Kohn
  • Suzi Hong

   in BMC Microbiology

  14 March 2022 Open Access

  
• Article

  A gut-derived metabolite alters brain activity and anxiety behaviour in mice

  • Brittany D. Needham
  • Masanori Funabashi
  • Sarkis K. Mazmanian

   in Nature

  14 February 2022

  
• Article

  Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

  • Youwen Qin
  • Aki S. Havulinna
  • Guillaume Méric

   in Nature Genetics

  3 February 2022

  
• Article

  Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity

  • Robert H. Mills
  • Parambir S. Dulai
  • David J. Gonzalez

   in Nature Microbiology

  27 January 2022

  
• Article

  Correction to: Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers

  • Qiyun Zhu
  • Qiangchuan Hou
  • Jiachao Zhang

   in The ISME Journal

  18 January 2022 Open Access
• Article

  Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity

  • Zheng Wang
  • Mykhaylo Usyk
  • Qibin Qi

   in Genome Biology

  10 December 2021 Open Access

  
• Article

  Clean room microbiome complexity impacts planetary protection bioburden

  • Ryan Hendrickson
  • Camilla Urbaniak
  • Kasthuri Venkateswaran

   in Microbiome

  4 December 2021 Open Access

  
• Article

  Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts

  • Zeni Wu
  • Autumn G. Hullings
  • Emily Vogtmann

   in BMC Microbiology

  22 November 2021 Open Access

  
• Article

  Reporting guidelines for human microbiome research: the STORMS checklist

  • Chloe Mirzayi
  • Audrey Renson
  • Levi Waldron

   in Nature Medicine

  17 November 2021

  
• Article

  The microbiome and prostate cancer

  • Juan Javier-DesLoges
  • Rana R. McKay
  • J. Kellogg Parsons

   in Prostate Cancer and Prostatic Diseases

  15 July 2021

  
• Article

  Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome

  • Shi Huang
  • Shuaiming Jiang
  • Jiachao Zhang

   in Microbiome

  30 June 2021 Open Access

  
• Article

  SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment

  • Clarisse Marotz
  • Pedro Belda-Ferre
  • Sarah M. Allard

   in Microbiome

  8 June 2021 Open Access

  
• Article

  Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers

  • Qiyun Zhu
  • Qiangchuan Hou
  • Jiachao Zhang

   in The ISME Journal

  2 June 2021 Open Access

  
• Article

  Structure-based protein function prediction using graph convolutional networks

  • Vladimir Gligorijević
  • P. Douglas Renfrew
  • Richard Bonneau

   in Nature Communications

  26 May 2021 Open Access