Benjamin Langmead

Springer Nature Publications

• Article

  Reference flow: reducing reference bias using multiple population genomes

  • Nae-Chyun Chen
  • Brad Solomon
  • Ben Langmead

   in Genome Biology

  4 January 2021 Open Access

  
• Article

  ASCOT identifies key regulators of neuronal subtype-specific splicing

  • Jonathan P. Ling
  • Christopher Wilks
  • Seth Blackshaw

   in Nature Communications

  9 January 2020 Open Access

  
• Article

  Dashing: fast and accurate genomic distances with HyperLogLog

  • Daniel N. Baker
  • Ben Langmead

   in Genome Biology

  4 December 2019 Open Access

  
• Article

  Improved metagenomic analysis with Kraken 2

  • Derrick E. Wood
  • Jennifer Lu
  • Ben Langmead

   in Genome Biology

  28 November 2019 Open Access

  
• Article

  Prefix-free parsing for building big BWTs

  • Christina Boucher
  • Travis Gagie
  • Taher Mun

   in Algorithms for Molecular Biology

  24 May 2019 Open Access

  
• Article

  How bioinformatics and open data can boost basic science in countries and universities with limited resources

  • Serghei Mangul
  • Lana S. Martin
  • Eleazar Eskin

   in Nature Biotechnology

  4 March 2019
• Conference paper

  Efficient Construction of a Complete Index for Pan-Genomics Read Alignment

  • Alan Kuhnle
  • Taher Mun
  • Giovanni Manzini

   in Research in Computational Molecular Biology

  1 January 2019

  
• Article

  FORGe: prioritizing variants for graph genomes

  • Jacob Pritt
  • Nae-Chyun Chen
  • Ben Langmead

   in Genome Biology

  17 December 2018 Open Access

  
• Article

  Erratum: Cloud computing for genomic data analysis and collaboration

  • Ben Langmead
  • Abhinav Nellore

   in Nature Reviews Genetics

  12 February 2018
• Article

  Cloud computing for genomic data analysis and collaboration

  • Ben Langmead
  • Abhinav Nellore

   in Nature Reviews Genetics

  30 January 2018

  
• Article

  A tandem simulation framework for predicting mapping quality

  • Ben Langmead

   in Genome Biology

  10 August 2017 Open Access

  
• Article

  Reproducible RNA-seq analysis using recount2

  • Leonardo Collado-Torres
  • Abhinav Nellore
  • Jeffrey T Leek

   in Nature Biotechnology

  11 April 2017

  
• Article

  Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive

  • Abhinav Nellore
  • Andrew E. Jaffe
  • Jeffrey T. Leek

   in Genome Biology

  30 December 2016 Open Access

  
• Article

  HISAT: a fast spliced aligner with low memory requirements

  • Daehwan Kim
  • Ben Langmead
  • Steven L Salzberg

   in Nature Methods

  9 March 2015

  
• Article

  Ballgown bridges the gap between transcriptome assembly and expression analysis

  • Alyssa C Frazee
  • Geo Pertea
  • Jeffrey T Leek

   in Nature Biotechnology

  6 March 2015

  
• Article

  Lighter: fast and memory-efficient sequencing error correction without counting

  • Li Song
  • Liliana Florea
  • Ben Langmead

   in Genome Biology

  15 November 2014 Open Access

  
• Article

  Reversible switching between epigenetic states in honeybee behavioral subcastes

  • Brian R Herb
  • Florian Wolschin
  • Andrew P Feinberg

   in Nature Neuroscience

  16 September 2012

  
• Article

  Fast gapped-read alignment with Bowtie 2

  • Ben Langmead
  • Steven L Salzberg

   in Nature Methods

  4 March 2012

  
• Article

  ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets

  • Alyssa C Frazee
  • Ben Langmead
  • Jeffrey T Leek

   in BMC Bioinformatics

  16 November 2011 Open Access

  
• Article

  Increased methylation variation in epigenetic domains across cancer types

  • Kasper Daniel Hansen
  • Winston Timp
  • Andrew P Feinberg

   in Nature Genetics

  26 June 2011