Whole genome amplification

Latest research

1. ScalableAligner: a fast NGS mapping tool for shared-memory system

   • Deyou Tang
   • Jialang Liang
   • Qingwen Deng

   in CCF Transactions on High Performance Computing

   Article 18 October 2025

   

2. Predicting sequence-specific amplification efficiency in multi-template PCR with deep learning

   • Andreas L. Gimpel
   • Bowen Fan
   • Robert N. Grass

   in Nature Communications

   Article Open access 16 October 2025

   

3. Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic

   • Jimin Park
   • Daniel E. Cook
   • Kishwar Shafin

   in Nature Biotechnology

   Article 16 October 2025

   

4. Application of Universal LNA Probe-Mediated Multiplex Real-Time PCR for the Detection of Antibiotic Resistance Genes

   • Li Tian
   • Bo Yan
   • Huijuan Wang

   in Molecular Biotechnology

   Article 16 October 2025

   

5. Genomic diversity and surveillance of SARS-CoV-2 in Nigeria

   • Thomas J. Y. Kono
   • Ezenwa J. Onyemata
   • Kennedy Otwombe

   in BMC Genomics

   Article Open access 14 October 2025

   

6. Design and calibration of the grid-based energetic neutral atom imager (GENA) for the Queqiao-2 mission

   • Qinglong Yu
   • Tianran Sun
   • Chi Wang

   in Science China Technological Sciences

   Article 14 October 2025

7. Diagnostic performance of the direct stool Xpert Carba-R assay in active surveillance of carbapenemase-producing enterobacterales

   • Cheon-Hoo Jun
   • Si-Ho Kim
   • Yu Mi Wi

   in Antimicrobial Resistance & Infection Control

   Article Open access 14 October 2025

   

8. Clinical long-read metagenomic sequencing of culture-negative infective endocarditis reveals genomic features and antimicrobial resistance

   • Worarat Kruasuwan
   • Ditthawat Pathomchareansukchai
   • Supathep Tansirichaiya

   in BMC Infectious Diseases

   Article Open access 14 October 2025

   

9. Rapid, simplified LAMP assay to detect Agroathelia rolfsii (syn. Sclerotium rolfsii) in black soybean with damping off

   • Ken Harata
   • Yusuke Momma
   • Susumu Tokumaru

   in Journal of General Plant Pathology

   Article 13 October 2025

   

10. Image simulation of grid-based energetic neutral atom imager onboard the Queqiao-2 mission

    • Dingnan Wang
    • Linxin Lei
    • Tianran Sun

    in Science China Technological Sciences

    Article 13 October 2025

11. Improving STR typing for low template DNA by abasic-site-mediated semi-linear preamplification

    • Qiqi Ji
    • Zhimin Li
    • Jianhui Xie

    in Scientific Reports

    Article Open access 13 October 2025

    

12. Whole-genome sequencing of Lassa virus from dry blood spots: a comparative evaluation

    • Umaru Bangura
    • Christopher Davis
    • Elisabeth Fichet-Calvet

    in Infectious Diseases of Poverty

    Article Open access 13 October 2025

    

13. Efficient and precise inversion of genomic DNA from large to chromosomal scale

    • Ao Zhang
    • Xiangkun Sun
    • Hao Yin

    in Nature Chemical Biology

    Article 08 October 2025

    

14. Loop mediated isothermal amplification (LAMP) as a rapid and portable diagnostic tool for the detection of pea root rot pathogens

    • Alba Pacheco-Moreno
    • Samuel Bruty
    • Sanu Arora

    in Scientific Reports

    Article Open access 07 October 2025

    

15. Scalable long-read nanopore HPV16 amplicon-based whole-genome sequencing

    • Maina K. Titus
    • David Giesbrecht
    • Jeffrey A. Bailey

    in Scientific Reports

    Article Open access 07 October 2025

    

16. Clinical experience of using integrated whole genome and transcriptome sequencing as a framework for pediatric and adolescent acute myeloid leukemia diagnosis and risk assessment

    • Rebecca K. Voss
    • Victor B. Pastor Loyola
    • Lu Wang

    in Leukemia

    Article Open access 07 October 2025

    

17. Evaluating urine volume and host depletion methods to enable genome-resolved metagenomics of the urobiome

    • Zachary J. Lewis
    • Angela Scott
    • Vanessa L. Hale

    in Microbiome

    Article Open access 02 October 2025

    

18. Nanoparticle-based biosensors coupled with loop-mediated isothermal amplification for rapid, visual, and in-field identification of pathogenic Leptospira

    • Ling Xie
    • Ying Liu
    • Xu Chen

    in BMC Infectious Diseases

    Article Open access 29 September 2025

    

19. Development of a novel genome exponential amplification reaction (GEAR) assay for rapid and ultrasensitive detection of Salmonella

    • A. A. P. Milton
    • K. Srinivas
    • Girish P. Shivanagowda

    in World Journal of Microbiology and Biotechnology

    Article 26 September 2025

    

20. Leveraging illumina iSeq100 for whole genome sequencing of Salmonella Typhi for a resource-limited setting

    • Nishan Katuwal
    • Shiva Ram Naga
    • Rajeev Shrestha

    in Scientific Reports

    Article Open access 26 September 2025

    

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