Biochemical Network

Latest research

1. A personalized recommendation framework through exploiting jump-enhanced random walk based multiple heterogeneous graph neural networks

   • Yufeng Wang
   • Fei Xie
   • Qun Jin

   in Applied Intelligence

   Article 18 October 2025

   

2. Uncovering therapeutic targets in Leishmania donovani through comparative network topology analysis

   • Upasana Hazarika
   • Anupam Nath Jha

   in Archives of Microbiology

   Article 18 October 2025

   

3. GRiNS: a python library for simulating gene regulatory network dynamics

   • Pradyumna Harlapur
   • Harshavardhan BV
   • Mohit Kumar Jolly

   in BMC Bioinformatics

   Article Open access 17 October 2025

   

4. Identification of diagnostic biomarkers and mitochondrial metabolic characteristics in sepsis-associated acute kidney injury

   • Yichun Xia
   • Yiming Qian
   • Jian Guo

   in European Journal of Medical Research

   Article Open access 17 October 2025

   

5. SMILES alignment: a dynamic programming approach for the alignment of metabolites and other small organic molecules

   • Alexis L. Tang
   • David A. Liberles

   in BMC Bioinformatics

   Article Open access 17 October 2025

   

6. A recursive enzymatic competition network capable of multitask molecular information processing

   • Souvik Ghosh
   • Mathieu G. Baltussen
   • Wilhelm T. S. Huck

   in Nature Chemistry

   Article Open access 17 October 2025

   

7. Super-resolution reconstruction of lung medical images integrating biological vision mechanisms

   • Tao Fang
   • Linling Fang
   • Hao Pan

   in Medical & Biological Engineering & Computing

   Article 16 October 2025

   

8. Unravelling Tinengotinib’s Mechanistic Landscape in Triple-Negative Breast Cancer Via Network Pharmacology and in Silico Simulation Techniques

   • Musab Ali
   • Narasimham L. Parinandi
   • Mahmoud E. S. Soliman

   in Cell Biochemistry and Biophysics

   Article Open access 16 October 2025

   

9. Functional and Structural Insights into Phenoloxidase from Hermetia illucens: A Combined Biochemical and Computational Approach

   • K. Sruthi
   • B. N. Marieshwari
   • S. Janarthanan

   in The Protein Journal

   Article 16 October 2025

   

10. Protein-Protein Interaction Network and Clustering Analysis of EPM2A: Insights into Glycogen Metabolism and Disease Associations

    • Kasala Farzia
    • Usha Adiga
    • Tunuguntla Amulya

    in Clinical & Translational Metabolism

    Article 15 October 2025

    

11. Nitrogen isotopic composition of amino acids reveals a variety of trophic ecology of organisms inhabiting chemosynthesis-based ecosystems

    • Masashi Tsuchiya
    • Takao Yoshida
    • Naohiko Ohkouchi

    in Progress in Earth and Planetary Science

    Article Open access 15 October 2025

    

12. DCMF-PPI: a protein-protein interaction predictor based on dynamic condition and multi-feature fusion

    • Siqi Chen
    • Anhong Zheng
    • Chao Zhan

    in BMC Bioinformatics

    Article Open access 15 October 2025

    

13. In silico biological discovery with large perturbation models

    • Djordje Miladinovic
    • Tobias Höppe
    • Patrick Schwab

    in Nature Computational Science

    Article Open access 15 October 2025

    

14. Interpolating perturbations across contexts

    • Han Chen
    • Christina V. Theodoris

    in Nature Computational Science

    Article 15 October 2025

    

15. Prediction of UGT-mediated phase II metabolism via ligand- and structure-based predictive models

    • Ludovica Bono
    • Filippo Lunghini
    • Serena Vittorio

    in Journal of Cheminformatics

    Article Open access 15 October 2025

    

16. Network pharmacology approach to the study of therapeutic role of selected phenolics on diabetic pancreatic islet cells based on multi-omics analysis

    • Sai Anand
    • Kannakazhi Kantari
    • Ashok Agraharam

    in Network Modeling Analysis in Health Informatics and Bioinformatics

    Article 15 October 2025

    

17. BiMA-DTI: a bidirectional Mamba-Attention hybrid framework for enhanced drug-target interaction prediction

    • Youyuan Shui
    • Xuewen Ge
    • Yun Liu

    in BMC Biology

    Article Open access 15 October 2025

    

18. Bayesian active learning-aided structure-based virtual screening reveals novel inhibitors of mutant IDH1

    • Sen Xu
    • Yue Yang
    • Yuguang Lei

    in Molecular Diversity

    Article 15 October 2025

    

19. Longitudinal multi-omics analyses of chemotherapy-induced peripheral neuropathy in response to taxanes

    • Anukriti Sharma
    • Ken B. Johnson
    • Daniel M. Rotroff

    in BMC Cancer

    Article Open access 15 October 2025

    

20. Interplay between malic enzyme 2, de novo serine synthesis, and the malate-aspartate shuttle drives metabolic adaptation in triple-negative breast cancer

    • Jin Heon Jeon
    • Mark D. Slayton
    • Sofia D. Merajver

    in Cancer & Metabolism

    Article Open access 14 October 2025

    

Related journals

• 

  Journal

  BMC Bioinformatics

  BMC Bioinformaticsis an open access, peer-reviewed journal that considers articles describing novel computational algorithms and software, models...

  Publishing model

  Open Access

  Journal Impact Factor

  3.3 (2024)

  Downloads

  7,556,602 (2024)

  Submission to first decision(median)

  5 days

• 

  Journal

  npj Systems Biology and Applications

  npj Systems Biology and Applicationsconsiders all aspects of research covering computational and mathematical approaches to analysis and modeling of...

  Publishing model

  Open Access

  Journal Impact Factor

  3.5 (2024)

  Downloads

  676,034 (2024)

  Submission to first decision(median)

  4 days

• 

  Journal

  Journal of Cheminformatics

  Journal of Cheminformatics is an open access journal publishing original peer-reviewed research in all aspects of cheminformatics. Coverage includes,...

  Publishing model

  Open Access

  Journal Impact Factor

  5.7 (2024)

  Downloads

  1,615,511 (2024)

  Submission to first decision(median)

  9 days