Biochemical Reaction Network

Latest research

1. Uncovering therapeutic targets in Leishmania donovani through comparative network topology analysis

   • Upasana Hazarika
   • Anupam Nath Jha

   in Archives of Microbiology

   Article 18 October 2025

   

2. GRiNS: a python library for simulating gene regulatory network dynamics

   • Pradyumna Harlapur
   • Harshavardhan BV
   • Mohit Kumar Jolly

   in BMC Bioinformatics

   Article Open access 17 October 2025

   

3. SMILES alignment: a dynamic programming approach for the alignment of metabolites and other small organic molecules

   • Alexis L. Tang
   • David A. Liberles

   in BMC Bioinformatics

   Article Open access 17 October 2025

   

4. A recursive enzymatic competition network capable of multitask molecular information processing

   • Souvik Ghosh
   • Mathieu G. Baltussen
   • Wilhelm T. S. Huck

   in Nature Chemistry

   Article Open access 17 October 2025

   

5. Protein-Protein Interaction Network and Clustering Analysis of EPM2A: Insights into Glycogen Metabolism and Disease Associations

   • Kasala Farzia
   • Usha Adiga
   • Tunuguntla Amulya

   in Clinical & Translational Metabolism

   Article 15 October 2025

   

6. In silico biological discovery with large perturbation models

   • Djordje Miladinovic
   • Tobias Höppe
   • Patrick Schwab

   in Nature Computational Science

   Article Open access 15 October 2025

   

7. An ODE-based multi-resolution parallel network for respiratory motion estimation

   • Ziming Zhang
   • Mingxiao Li
   • Ruoyu Wang

   in Medical & Biological Engineering & Computing

   Article 14 October 2025

   

8. Multi-omic network inference from time-series data

   • María Moscardó García
   • Atte Aalto
   • Jorge Gonçalves

   in npj Systems Biology and Applications

   Article Open access 14 October 2025

   

9. Hierarchical intertwined graph representation learning for skeleton-based action recognition

   • Xi Zhang
   • Caiyan Tan
   • Jiexing Yan

   in Scientific Reports

   Article Open access 10 October 2025

   

10. Mapping dynamical systems into chemical reactions

    • Tomislav Plesa

    in Nonlinear Dynamics

    Article Open access 07 October 2025

    

11. Constraint based modeling of drug induced metabolic changes in a cancer cell line

    • Xavier Benedicto
    • Åsmund Flobak
    • Alfonso Valencia

    in npj Systems Biology and Applications

    Article Open access 06 October 2025

    

12. A perspective: A biochemical model of photosynthetic CO₂ assimilation in leaves of C₃ species (Planta 149, 78–90)

    • Susanne von Caemmerer
    • Joseph A. Berry
    • Graham D. Farquhar

    in Planta

    Article Open access 06 October 2025

    

13. Machine learning matches enzymes with molecular substrates

    in Nature

    Article 01 October 2025

    

14. Connecting chemical and protein sequence space to predict biocatalytic reactions

    • Alexandra E. Paton
    • Daniil A. Boiko
    • Alison R. H. Narayan

    in Nature

    Article Open access 01 October 2025

    

15. Analysis of variable-order fractional enzyme kinetics model with time delay

    • K. Agilan
    • S. Naveen
    • V. Parthiban

    in Scientific Reports

    Article Open access 01 October 2025

    

16. Biologically inspired neural network layer with homeostatic regulation and adaptive repair mechanisms

    • MD Azizul Hakim
    • Mohammad Ifazul Alam

    in Scientific Reports

    Article Open access 30 September 2025

    

17. A multiattribute fusion-based deep neural collaborative filtering model for predicting next process activities

    • Gubao Mao
    • Xianwen Fang
    • Xiwei Zhang

    in Cluster Computing

    Article 29 September 2025

    

18. Interpretation of multivariate metabolomic models through network-guided perturbation-based explanations

    • Julia Kuligowski
    • Abel Albiach-Delgado
    • Guillermo Quintás

    in Metabolomics

    Article 26 September 2025

    

19. Chemical knowledge-informed framework for privacy-aware retrosynthesis learning

    • Guikun Chen
    • Xu Zhang
    • Wenguan Wang

    in Nature Communications

    Article Open access 25 September 2025

    

20. Robotic system takes chemistry into hyperspace

    • William E. Robinson

    in Nature

    Article 24 September 2025

    

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