Chromatin analysis

Latest research

1. Chromatin remodeling restrains oncogenic functions in prostate cancer

   • Valentina Rosti
   • Giovanni Lembo
   • Chiara Lanzuolo

   in Nature Communications

   Article Open access 16 October 2025

   

2. A conserved H3K14ub-driven H3K9me3 for chromatin compartmentalization

   • Yuanyong Huang
   • Yimei Sun
   • Jiemin Wong

   in Nature

   Article 15 October 2025

   

3. Persistent open chromatin state in early-life stress-activated cells of the VTA

   • Rebekah L. Rashford
   • Michael DeBerardine
   • Catherine Jensen Peña

   in Scientific Reports

   Article Open access 15 October 2025

   

4. Mapping SET1B chromatin interactions with DamID using DamMapper, a comprehensive Snakemake workflow

   • Niek Wit
   • James Bertlin
   • James Nathan

   in BMC Genomics

   Article Open access 14 October 2025

   

5. Combining CRISPR perturbations with chromatin profiling

   • Iris Marchal

   in Nature Biotechnology

   Article 14 October 2025

6. A comprehensive benchmark of single-cell Hi-C embedding tools

   • Dylan Plummer
   • Xiuyuan Lang
   • Fulai Jin

   in Nature Communications

   Article Open access 14 October 2025

   

7. The Roles of Histone H3K18 Lactylation, Acetylation, and Lactylation/Acetylation Ratio as Potential Biomarkers in the Diagnosis and Severity Assessment of Sepsis and Septic Shock

   • Chenyi Di
   • Xin Chu
   • Zhigang Chang

   in Infectious Diseases and Therapy

   Article Open access 14 October 2025

   

8. Chromatin state dynamics of autosomes and the B chromosome during spermatogenesis in Pseudococcus viburni

   • Marion Herbette
   • Laura Ross

   in Heredity

   Article Open access 13 October 2025

   

9. EP300 genomic redistribution following E-cadherin inhibition in MCF7 cancer cells: evidence for early epigenetic reprogramming

   • Hassan Kaabi
   • Aseel Sharaireh
   • Hanan Aljohani

   in Histochemistry and Cell Biology

   Article 13 October 2025

   

10. Proteins driving liquid-liquid phase separation and histone modifications cooperatively associate with chromatin looping and transcriptional regulation

    • Xue Ji
    • Yumin Nie

    in Epigenetics & Chromatin

    Article Open access 10 October 2025

    

11. IceQream: Quantitative chromosome accessibility analysis using physical TF models

    • Akhiad Bercovich
    • Aviezer Lifshitz
    • Amos Tanay

    in Nature Communications

    Article Open access 09 October 2025

    

12. H³NGST: a fully automated, web-based platform for end-to-end ChIP-seq analysis

    • Hyeon Ho Heo
    • Soo-Jong Um

    in BMC Bioinformatics

    Article Open access 09 October 2025

    

13. PB-DiffHiC: a statistical framework for detecting differential chromatin interactions from high resolution pseudo-bulk Hi-C data

    • Yan Zhou
    • Yaohua Hu
    • Dechao Tian

    in BMC Genomics

    Article Open access 09 October 2025

    

14. Cell-free DNA–based inference of the activities of 370 + transcription factors mirrors their activities in tumors

    • Ryuji Tamaki
    • Koji Sagane
    • Taisuke Hoshi

    in BMC Genomics

    Article Open access 07 October 2025

    

15. Linkage: an interactive web application for linking of DNA regulatory peaks to genes

    • Siwen Xu
    • Yuyan Luo
    • Jin Yang

    in BMC Genomics

    Article Open access 07 October 2025

    

16. Cracking the histone code for prostate cancer therapy

    in Nature Genetics

    Article 07 October 2025

    

17. Targeting histone H2B acetylated enhanceosomes via p300/CBP degradation in prostate cancer

    • Jie Luo
    • Zhixiang Chen
    • Arul M. Chinnaiyan

    in Nature Genetics

    Article Open access 03 October 2025

    

18. The inner nuclear membrane protein LEMD3 organizes the 3D chromatin architecture to maintain vascular smooth muscle cell identity

    • Wenqiang Li
    • Yunxi Liao
    • Yi Fu

    in Nature Communications

    Article Open access 03 October 2025

    

19. Disruption of histone acetylation homeostasis reveals multilayered chromatin regulation for transcriptional resiliency

    • Vrinda Venu
    • Eric M. Small
    • Christina R. Steadman

    in Epigenetics & Chromatin

    Article Open access 03 October 2025

    

20. Benchmarking scRNA-seq copy number variation callers

    • Katharina T. Schmid
    • Aikaterini Symeonidi
    • Maria Colomé-Tatché

    in Nature Communications

    Article Open access 02 October 2025

    

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