Comparative Genomics

Latest research

1. Multi-threaded SIMD strategies and frequency scaling for sustainable evolutionary biology

   • Sergio Santander-Jiménez
   • Miguel A. Vega-Rodríguez

   in Cluster Computing

   Article Open access 17 October 2025

   

2. Robust regression rescues poor phylogenetic decisions

   • Mataya Duncan
   • Michael DeGiorgio
   • Richard Adams

   in BMC Ecology and Evolution

   Article Open access 16 October 2025

   

3. Reference genome bias in light of species-specific chromosomal reorganization and translocations

   • Marius F. Maurstad
   • Siv Nam Khang Hoff
   • Sissel Jentoft

   in Genome Biology

   Article Open access 15 October 2025

   

4. Comparative genomics sheds light on mammalian and avian gene regulation and phenotypic evolution

   • Anabella P. Trigila
   • Paula Beati
   • Lucía F. Franchini

   in Nature Communications

   Article Open access 14 October 2025

   

5. PAHG: the database of human multi-gene families

   • Ramsha Azhar
   • Muhammad Faizan Malik
   • Amir Ali Abbasi

   in BMC Genomic Data

   Article Open access 14 October 2025

   

6. Comparative evaluation of MG-RAST, MEGAN6 and Kraken2 for whole metagenome analysis of saffron corms for bacterial community structure and function

   • Nitika Sharma
   • Ayushi Verma
   • Jyoti Vakhlu

   in Molecular Genetics and Genomics

   Article 14 October 2025

   

7. A Multi-level Perspective on the Evolution of Orthologs and Their Functions

   • Felix Langschied
   • Ruben Iruegas
   • Ingo Ebersberger

   in Journal of Molecular Evolution

   Article Open access 13 October 2025

   

8. Genomic and Pan-Genomic Characterization of Elizabethkingia meningoseptica Reveals Resistance Gene Profiles, Phylogenetic Clusters, and Functional Landscape

   • Zheng Zhou
   • Wenqing Xiang
   • Hongqiang Shen

   in Current Microbiology

   Article 11 October 2025

   

9. VIRI: a visualization tool for tree reconciliations

   • Maurizio Patrignani
   • Giordano Dionisi
   • Tiziana Calamoneri

   in BMC Bioinformatics

   Article Open access 08 October 2025

   

10. The two sub-genomes of the allotetraploid frog Xenopus laevis are evolving under similar selective pressure in extant populations

    • Dareen Almojil
    • Vinu Manikandan
    • Stéphane Boissinot

    in BMC Genomics

    Article Open access 07 October 2025

    

11. Relative performance of three phylogenetic methods based on complete mitochondrial genomes of barnacle

    • Seongjun Bae

    in Scientific Reports

    Article Open access 06 October 2025

    

12. Exploring the genetic basis of heterosis in eucalypt growth based on transcriptome analysis

    • Zhiyi Su
    • Wanhong Lu
    • Jianzhong Luo

    in BMC Genomics

    Article Open access 03 October 2025

    

13. Comparative chloroplast genomes of Sophora species: identification of variable DNA markers and phylogenetic relationships within the genus

    • Na Duan
    • Dafu Ru
    • Bingbing Liu

    in BMC Plant Biology

    Article Open access 03 October 2025

    

14. Whole-genome sequencing and variants data of 304 indigenous goats from Southwest China

    • Jipan Zhang
    • Di Zhou
    • Yongju Zhao

    in Scientific Data

    Article Open access 30 September 2025

    

15. Forward and reverse genomic screens enhance the understanding of phenotypic variation in a large Chinese rhesus macaque cohort

    • Bao-Lin Zhang
    • Yongxuan Chen
    • Dong-Dong Wu

    in Nature Communications

    Article Open access 30 September 2025

    

16. Transcriptomic and flavor metabolomic exploration of the genetic basis of meat quality and flavor in Tibetan sheep

    • Xue Li
    • Buying Han
    • Dehong Tian

    in BMC Genomics

    Article Open access 29 September 2025

    

17. Chromosome-level genome assembly of the coral grouper, Epinephelus corallicola and its evolutionary insights into Eupercaria

    • Baojun Zhao
    • Chaofan Jin
    • Jingjie Hu

    in BMC Genomics

    Article Open access 26 September 2025

    

18. Unraveling canine genetic diversity: molecular insights into behavior, morphology, and physiology

    • Ajay Singh
    • Monika Sharma
    • Sonika Ahlawat

    in Mammal Research

    Article 26 September 2025

    

19. Differential expression of antennal chemosensory genes related to host preference of Culex pipiens biotypes

    • Rohan Menon
    • Rickard Ignell
    • Sharon R. Hill

    in Parasites & Vectors

    Article Open access 23 September 2025

    

20. Bryophytes hold a larger gene family space than vascular plants

    • Shanshan Dong
    • Sibo Wang
    • Yang Liu

    in Nature Genetics

    Article Open access 22 September 2025

    

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