Model prokaryotes

Latest research

1. Discovery of two natural strains closely similar to the model strain Anabaena sp. PCC 7120 used in molecular studies of heterocyst differentiation

   • Xi Hu
   • Weipeng Wang
   • Xudong Xu

   in Journal of Oceanology and Limnology

   Article 17 October 2025

2. Optimized elemental sulfur recovery from sulfide-containing streams applying systems biology and genome-scale metabolic model of Thioalkalivibrio versutus D301

   • Reza Peighami
   • Ehsan Motamedian
   • Fatemeh Yazdian

   in Bioprocess and Biosystems Engineering

   Article 15 October 2025

   

3. Predicting microbial community structure and temporal dynamics by using graph neural network models

   • Kasper Skytte Andersen
   • Kai Zhao
   • Per Halkjær Nielsen

   in Nature Communications

   Article Open access 14 October 2025

   

4. Advancing virulence factor prediction using protein language models

   • Yitong Liu
   • Xin Cao
   • Hong Li

   in BMC Biology

   Article Open access 14 October 2025

   

5. iPro-MP: a BERT-based model to predict multiple prokaryotic promoters

   • Wei Su
   • Yuhe Yang
   • Hao Lin

   in Genome Biology

   Article Open access 13 October 2025

   

6. Defined and refined: development of a minimal medium for Clostridium pasteurianum

   • Natalia Nadal Alemany
   • Daniëlle Catharina Verboon
   • Rebeca Gonzalez-Cabaleiro

   in Applied Microbiology and Biotechnology

   Article Open access 11 October 2025

   

7. Fermentation process optimization of a bacteriostatic Bacillus coagulans based on response surface methodology

   • Yonghong Li
   • Xiuxiu Wu
   • Keke Li

   in AMB Express

   Article Open access 09 October 2025

   

8. Newly isolated bacteriophages show efficacy and phage-antibiotic synergy in vitro against the equine genital pathogens Klebsiella pneumoniae and Pseudomonas aeruginosa

   • Martin Köhne
   • Ronja Hüsch
   • Harald Sieme

   in BMC Veterinary Research

   Article Open access 03 October 2025

   

9. Unlocking data in Klebsiella lysogens to predict capsular type-specificity of phage depolymerases

   • Robby Concha-Eloko
   • Beatriz Beamud
   • Rafael Sanjuán

   in Nature Communications

   Article Open access 02 October 2025

   

10. Characterization of bacteriophages PAA and PAM and evaluation of their antibiotic synergy against Pseudomonas aeruginosa PAZMYU isolated from urine sample

    • Aneela Nawaz
    • Nauman Ahmed Khalid
    • Samiullah Khan

    in BMC Microbiology

    Article Open access 02 October 2025

    

11. Making waves: how biofilms find their rhythm

    • Liam Mark Rooney

    in Nature Reviews Microbiology

    Article 01 October 2025

12. Application of Three Kinetic Models for the Prediction of Biomethane Yield of Combined Oxidative and Nanoparticle Additives Pretreated Xyris capensis

    • K. O. Olatunji
    • A. D. Olugbemide
    • D. M. Madyira

    in BioEnergy Research

    Article Open access 30 September 2025

    

13. Bacteriophage T4 propagation in E.coli exposed to severe substrate limitation

    • Ana Lisac
    • Aleš Podgornik

    in Virology Journal

    Article Open access 26 September 2025

    

14. HKDE-LACM: a hybrid model for lactic acid bacteria classification via k-mer and DNABERT-2 embedding fusion with cyclic DE-BO optimization

    • Jie Zou
    • Weichi Liu
    • Gaifang Dong

    in BMC Genomics

    Article Open access 25 September 2025

    

15. Genomic Analysis, Safety Evaluation, and Incorporation of Probiotic Candidate Lactiplantibacillus plantarum Jb21-11 into an Ice Cream Formulation

    • Mohamed Amine Gomri
    • Nadia Bachtarzi
    • Karima Kharroub

    in Probiotics and Antimicrobial Proteins

    Article 22 September 2025

    

16. Selection of lyoprotectants for the stabilization of the freeze-dried probiotic Limosilactobacillus reuteri CRL 1098 by an accelerated inactivation assay

    • María Inés Torino
    • Graciela Font
    • María Pía Taranto

    in Biotechnology Letters

    Article 16 September 2025

    

17. AI designs de novo antibiotics

    • Iris Marchal

    in Nature Biotechnology

    Article 15 September 2025

18. Perfect fluid dark matter: a viability test with galaxy rotation curves

    • Jan Kuncewicz

    in The European Physical Journal C

    Article Open access 13 September 2025

    

19. A novel predictive model for bacterial growth on kitchen surfaces under thermal variations and user behaviors interactions

    • Hua Zhou
    • Meng Liu
    • Chi Feng

    in Building Simulation

    Article 12 September 2025

20. Learning ecosystem-scale dynamics from microbiome data with MDSINE2

    • Travis E. Gibson
    • Younhun Kim
    • Georg K. Gerber

    in Nature Microbiology

    Article Open access 09 September 2025