Protein Structure

Latest research

1. Structural and physicochemical changes in protein and starch during finger millet storage

   • C. Nickhil
   • Raj Singh
   • Brijesh Srivastava

   in Discover Food

   Article Open access 17 October 2025

   

2. Structure-function relationship of the GH168 fucanase reveals an unusual enzyme recognition mechanism for sulfated polysaccharide

   • Guangning Chen
   • Jingjing Shen
   • Yaoguang Chang

   in Nature Communications

   Article Open access 17 October 2025

   

3. AQuaRef: machine learning accelerated quantum refinement of protein structures

   • Roman Zubatyuk
   • Malgorzata Biczysko
   • Pavel V. Afonine

   in Nature Communications

   Article Open access 17 October 2025

   

4. Learning conformational flexibility of immune receptors

   • Long-Chen Shen
   • Dong-Jun Yu
   • Jiangning Song

   in Nature Machine Intelligence

   Article 16 October 2025

   

5. Structural insights into the secretin complex of a type IVb pilus system

   • Chenchen Pei
   • Hui Sun
   • Meng Yin

   in Nature Communications

   Article Open access 16 October 2025

   

6. Residue 301-dependent epitope mapping reveals the molecular basis for GPV/MDPV serotype discrimination by neutralizing monoclonal antibody D1

   • Shifeng Xiao
   • Xiaoli Zhu
   • Shilong Chen

   in Veterinary Research

   Article Open access 16 October 2025

   

7. Predicting the conformational flexibility of antibody and T cell receptor complementarity-determining regions

   • Fabian C. Spoendlin
   • Monica L. Fernández-Quintero
   • Charlotte M. Deane

   in Nature Machine Intelligence

   Article Open access 16 October 2025

   

8. Structural basis of K11/K48-branched ubiquitin chain recognition by the human 26S proteasome

   • Piotr Draczkowski
   • Szu-Ni Chen
   • Shang-Te Danny Hsu

   in Nature Communications

   Article Open access 15 October 2025

   

9. How nitrogenase enzymes have adapted structurally to Earth’s environments over geological timescales

   • B Gopal

   in Journal of Biosciences

   Article 14 October 2025

   

10. Structure of the central Staphylococcus aureus AAA+ protease MecA/ClpC/ClpP

    • Stavros Azinas
    • Karin Wallden
    • Marta Carroni

    in Communications Biology

    Article Open access 14 October 2025

    

11. ProFlex as a linguistic bridge for decoding protein dynamics in normal mode analysis

    • Damian J. Magill
    • Timofey A. Skvortsov

    in Nature Communications

    Article Open access 13 October 2025

    

12. Structural and Functional Characterization of a Cysteine Protease from Nelumbo nucifera as a Potential Biopesticide against Sitotroga cerealella

    • Aqal Zaman
    • Shah Rukh
    • Mohibullah Shah

    in Cell Biochemistry and Biophysics

    Article 13 October 2025

    

13. Enhanced computational strategies for categorizing HER2 kinase domain variants of uncertain significance through structural and functional analysis

    • Tamizhini Loganathan
    • C. George Priya Doss

    in Mammalian Genome

    Article 10 October 2025

    

14. Determining accurate conformational ensembles of intrinsically disordered proteins at atomic resolution

    • Kaushik Borthakur
    • Thomas R. Sisk
    • Paul Robustelli

    in Nature Communications

    Article Open access 10 October 2025

    

15. BioEmu is a biomolecular emulator for sampling protein structure ensembles

    • Arunima Singh

    in Nature Methods

    Article 09 October 2025

16. Structural insights into Cir-mediated killing by the antimicrobial protein Microcin V

    • Stavros A. Maurakis
    • Angela C. O’Donnell
    • Susan K. Buchanan

    in Communications Biology

    Article Open access 09 October 2025

    

17. Cryo-EM structure of the yeast Saccharomyces cerevisiae SDH provides a template for eco-friendly fungicide discovery

    • Zhi-Wen Li
    • Yuan-Hui Huang
    • Guang-Fu Yang

    in Nature Communications

    Article Open access 08 October 2025

    

18. Improved structure prediction of protein complexes is within GRASP

    in Nature Methods

    Article 08 October 2025

    

19. Structural insights into the mechanism of activation and inhibition of the prostaglandin D2 receptor 1

    • Behnaz Davoudinasab
    • Aleksey Raskovalov
    • Vadim Cherezov

    in Nature Communications

    Article Open access 08 October 2025

    

20. Unravelling the dynamics of the maturation protein in MS2 bacteriophage via molecular simulations

    • Srdan Masirevic
    • Jan K. Marzinek
    • Peter J. Bond

    in Scientific Reports

    Article Open access 08 October 2025

    

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