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#hidden-markov-model #sequence-alignment #biological-sequence #profile #phmm #nail

libnail

Libnail is a library that performs profile Hidden Markov Model (PHMM) biological sequence alignment

4 releases (breaking)

0.4.0 Jun 18, 2025
0.3.0 Dec 24, 2024
0.2.0 Jul 12, 2024
0.1.0 Jan 28, 2024

#360 in Biology

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201 downloads per month
Used in nail

BSD-3-Clause

315KB
7K SLoC

libnail

About

libnail is a library that performs profile Hidden Markov Model (PHMM) biological sequence alignment.

This libary is in early stages of development. The API should be considered highly unstable, and documentation is lacking.

Installation

To build libnail from source, you'll first need to install Rust and Cargo. The easiest way to do that is to use rustup.

Once that's done, you can then build nail:

git clone https://github.com/TravisWheelerLab/nail
cd nail/
cargo build --release

License

libnail is licensed under the BSD-3-Clause license.

See LICENSE for details.

Authors

Jack Roddy - [email protected]

Dependencies

~3.5–7MB
~132K SLoC