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Lib.rs

› Keywords #bioinformatics #fastq #bam #crispr #crispr-sequencing #genomics #bio

#sequencing

  1. rust-htslib

    HTSlib bindings and a high level Rust API for reading and writing BAM files

    v0.51.0 5.6K #bam #bioinformatics #pileup #sequencing

  2. bqtools

    A command-line tool for interacting with BINSEQ file formats

    v0.4.15 #bioinformatics #fastx #binseq #sequencing #bio

  3. rumina

    High-throughput UMI-aware deduplication of next-generation sequencing data

    v0.99.5 600 #bam #deduplicate #barcode #bioinformatics #sequencing

  4. primerpincer

    A CLI primer trimming tool for long-read sequencing data

    v0.8.0 #bioinformatics #fastq #sequencing #primers #microbiome

  5. ratio-genetic

    Ratio's genetic algorithms library

    v0.5.3 #graph #sequencing #matrix

  6. sgcount

    A fast and flexible sgRNA counter

    v0.1.35 1.0K #bioinformatics #crispr-sequencing #crispr #sg-rna #sequencing

  7. fastx

    reads Fasta and FastQ files with little overhead

    v0.6.0 #bioinformatics #fasta #fastq #genome #sequencing

  8. fxtools

    A collection of commandline Fasta/Fastq utility tools

    v0.2.39 2.3K #bioinformatics #fastq #sequencing

  9. fastq-fix-i5

    Rewrite FASTQ headers by reverse-complementing only the i5 (P5/index2) part in ...:i7+i5

    v1.0.0 #fastq #bioinformatics #sequencing

  10. repgenerate

    demultiplexer and read summarizer for illumina sequencing

    v0.3.0 160 #read #report-generation #illumina #sequencing #demultiplexing #summarizer

  11. mbf-fastq-processor

    The fast, reliable multitool of FASTQ processing

    v0.8.1 #bioinformatics #fastq #sequencing #bio

  12. fxread

    A barebones fastx reader for rust

    v0.2.14 1.5K #bioinformatics #dna #sequencing

  13. dnacomb

    Count the occurances of structured sequence reads and compare to an expected library

    v0.5.0 #bioinformatics #read #sequencing #library #bio

  14. sketchlib

    Genome and amino-acid sketching

    v0.2.4 550 #genomics #bioinformatics #genomics-sequencing #k-mer #sequencing #sketch

  15. ratio-markov

    Markov chain steady-state calculations with applications in graph clustering and sequencing

    v0.5.2 #graph #probability #sequencing #matrix

  16. righor

    creates model of Ig/TCR sequences from sequencing data

    v0.2.6 440 #data-model #sequencing #infer #pgen #numpy #tcr #ig

  17. binseq

    A high efficiency binary format for sequencing data

    v0.8.3 280 #genomics #genomics-sequencing #bioinformatics #fastq #sequencing #nucleotide

  18. hts-sys

    HTSlib bindings

    v2.2.0 5.9K #bam #bioinformatics #htslib #sequencing #pileup

  19. matchbox-cli

    A flexible processor for sequencing reads

    v0.3.1 #sequencing #fastq #fasta #bam #processor #edit-distance #mb #fq

  20. geopagg

    algorithm for p-value aggregation of sgRNAs across gene groupings

    v0.3.1 650 #bioinformatics #sg-rna #crispr-sequencing #crispr #sequencing

  21. intc

    *-INC method to calculate an empirical FDR for non-targeting controls in CRISPR screens

    v0.3.6 850 #crispr-sequencing #bioinformatics #crispr #sg-rna #sequencing

  22. disambiseq

    Create unambiguous one-off mismatch libraries for DNA sequences

    v0.2.2 110 #bioinformatics #mismatch #dna #sequencing

  23. extended-htslib

    extended HTSlib bindings and a high level Rust API for reading and writing BAM files

    v0.2.0 #bam #htslib #bioinformatics #pileup #sequencing

  24. debruijn

    Tools for DNA sequences: efficient k-mer manipulation, De Bruijn graph construction and compaction and handling of DNA strings

    v0.3.4 180 #k-mer #dna #sequencing

  25. podders

    Write uncompressed Pod5 files in native rust. No FFI! PODDDDERS

    v0.1.4 210 #nanopore #file-parsing #bioinformatics #sequencing

  26. alpha-rra

    algorithm for p-value aggregation on groups of genes

    v0.3.3 1.0K #crispr-sequencing #bioinformatics #sg-rna #crispr #sequencing

  27. seqpls

    My sequences please - a paired fastq grepper with regex support

    v0.1.1 #genomics #genomics-sequencing #grep #bioinformatics #sequencing

  28. fg-stitch-lib

    Stitch aligner implementation and supporting utilities

    v0.1.1 #genomics #aligner #bioinformatics #sam #sequencing #read-alignment #stitch #contigs #chimeric

  29. sequencer

    Dependency graph processing libarary

    v0.1.1 #graph #sequencing

  30. casmap

    A way to count and characterize constructs for cas12 6-plex CRISPR screens

    v0.1.3 #crispr-sequencing #crispr #bioinformatics #cas12 #sequencing

  31. casgen

    A way to generate cas12 6-plex CRISPR sequences

    v0.1.4 #crispr #crispr-sequencing #cas12 #bioinformatics #sequencing

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  32. audact

    Minimalist synth and sequencing lib

    v0.5.1 #synth #waveform #lib #sequencing #system #notes #freq

  33. cgt_bacpop

    Label core and rare genes in pangenome dataa

    v0.1.0 #genomics #bioinformatics #genomics-sequencing #pangenome #sequencing

  34. vbinseq

    A high efficiency binary format for sequencing data with variable-length records

    v0.1.7 150 #genomics #genomics-sequencing #bioinformatics #fastq #sequencing #nucleotide

  35. barkit

    — a cross-platform and ultrafast toolkit for barcodes manipulation in FASTQ files

    v0.1.1 320 #bioinformatics #barcode #sequencing

  36. barkit-extract

    extracting barcode nucleotide sequence according to a specified regex pattern

    v0.1.1 330 #bioinformatics #barcode #sequencing

  37. illumina_coordinates

    Parses Illumina sequence identifiers found in FASTQ files

    v0.9.1 #bioinformatics #fastq #sequencing #illumina #champ