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Introduction to Bioimage Analysis

Front matter

Acknowledgements
License & Reuse
Disclaimer
Changelog

Before we begin

Preface
How to read this book

Introducing images

Images & pixels
- ImageJ: Images & pixels
- Python: Images & pixels
Measurements & histograms
- ImageJ: Measurements & histograms
- Python: Measurements & histograms
Types & bit-depths
- ImageJ: Types & bit-depths
- Python: Types & bit-depths
Channels & colors
- ImageJ: Channels & colors
- Python: Channels & colors
Pixel size & dimensions
- ImageJ: Pixel size & dimensions
- Python: Pixel size & dimensions
Files & file formats
- ImageJ: Files & file formats
- Python: Files & file formats

Processing & analysis

Image processing & analysis
Point operations
- ImageJ: Point operations
Thresholding
- ImageJ: Thresholding
Filters
- ImageJ: Filters
Morphological operations
- ImageJ: Morphological operations
Image transforms
- ImageJ: Image transforms
Multidimensional processing
- ImageJ: Multidimensional processing

Fluorescence microscopy

From photons to pixels
Blur & the PSF
Noise
Microscopes & detectors

Appendices

Beyond this book
Python Primer
ImageJ: Writing macros
- Difference of Gaussians
- Simulating image formation

Index

By Pete Bankhead

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All content is licensed under CC-BY 4.0, except where noted otherwise. See License & Reuse for details.