Package: CBNplot
Type: Package
Title: plot bayesian network inferred from gene expression data based on enrichment analysis results
Version: 1.9.0
Authors@R: person("Noriaki", "Sato", email = "[email protected]", role = c("cre", "aut"))
Description: This package provides the visualization of bayesian network inferred from gene expression data. The networks are based on enrichment analysis results inferred from packages including clusterProfiler and ReactomePA. The networks between pathways and genes inside the pathways can be inferred and visualized.
License: Artistic-2.0
Encoding: UTF-8
Depends:
    R (>= 4.3.0)
Imports: ggplot2, magrittr, graphite, ggraph, igraph, bnlearn (>= 4.7), patchwork, org.Hs.eg.db, clusterProfiler, utils, enrichplot, reshape2, ggforce, dplyr, tidyr, stringr, depmap, ExperimentHub, Rmpfr, graphlayouts, BiocFileCache, ggdist, purrr, pvclust, stats, rlang
Suggests: 
    knitr,
    arules,
    concaveman,
    ReactomePA,
    bnviewer,
    rmarkdown,
    withr,
    BiocStyle,
    testthat (>= 3.0.0)
biocViews: Visualization, Bayesian, GeneExpression, NetworkInference, Pathways, Reactome, Network, NetworkEnrichment, GeneSetEnrichment
VignetteBuilder: knitr
RoxygenNote: 7.3.2
URL: https://github.com/noriakis/CBNplot
BugReports: https://github.com/noriakis/CBNplot/issues
Config/testthat/edition: 3