## 1.5.3 ## Transition to use `SingleCellExperiment` and manage log counts slot. ### Version 1.7.3 * Fixed a bug were weighted residuals weren't being returned, causing the residuals hook to fail. * Fixed documentation and vignettes. * Added CovFromBoots() API to return inter-gene covariance matrices for model coefficients from GSEA bootstraps. * Added some files and directories to .Rbuildignore to address notes and warnings. ## 1.11.2 ## - Deprecated functions in version 1.8.0 are now Defunct. `filter` (defunct since 1.8.0) has been removed. Use mast_filter now. - Refactored the `FromMatrix` constructor so that list-like assays don't make a roundtrip through an array. This allows sparse-matrix and HDF5-backed assays to be provided to the constructor. - zlm gains an `exprs_value` argument to allow the assay to be selected that will be tested. ## 1.25.1 ## - Fixed an issue in stat_ell - Warn rather than error out if `zlm` is called with bad dot args (https://github.com/satijalab/seurat/issues/6489)