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Package: SanityR
Type: Package
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Title: R/Bioconductor interface to the Sanity model gene expression analysis
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Version: 0.99.3
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Authors@R: c(
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person("Teo", "Sakel",
email = "[email protected]",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-9946-9498")),
person("MCIU/AEI",
role = c("fnd"),
comment = c(ROR = "05r0vyz12", DOI = "10.13039/501100011033"))
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)
Description: a Bayesian normalization procedure derived from first principles.
Sanity estimates expression values and associated error bars directly from
raw unique molecular identifier (UMI) counts without any tunable parameters.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
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biocViews: Software, GeneExpression, SingleCell, Normalization, Bayesian
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BiocType: Software
URL: https://github.com/TeoSakel/SanityR
BugReports: https://github.com/TeoSakel/SanityR/issues
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Imports:
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Rcpp,
BiocGenerics,
BiocParallel,
MatrixGenerics,
methods,
S4Vectors,
scuttle,
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SingleCellExperiment,
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SummarizedExperiment
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LinkingTo: Rcpp
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
Suggests:
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BiocStyle,
knitr,
rmarkdown,
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testthat (>= 3.0.0),
scater,
Rtsne
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Config/testthat/edition: 3
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VignetteBuilder: knitr
|
