Package: SynMut
Type: Package
Title: SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures
Version: 1.27.0
Authors@R: c(person("Haogao", "Gu", email = "[email protected]", role = c("aut", "cre")),
    person("Leo L.M.", "Poon", email = "[email protected]", role = "led"))
Description: 
    There are increasing demands on designing virus mutants with specific dinucleotide or codon composition. 
    This tool can take both dinucleotide preference and/or codon usage bias into account while designing mutants.
    It is a powerful tool for in silico designs of DNA sequence mutants.
License: GPL-2
Encoding: UTF-8
Suggests: 
    BiocManager,
    knitr,
    rmarkdown,
    testthat,
    devtools,
    prettydoc,
    glue
VignetteBuilder: knitr
Imports: 
    seqinr,
    methods,
    Biostrings,
    stringr,
    BiocGenerics
RoxygenNote: 7.1.0
Collate: 
    'regioned_dna_Class.R'
    'codon_mimic.R'
    'input_seq.R'
    'codon_random.R'
    'codon_to.R'
    'dinu_to.R'
    'distance_analysis.R'
    'region_related.R'
    'seq_random.R'
    'zzz.R'
biocViews: SequenceMatching, ExperimentalDesign, Preprocessing
BugReports: https://github.com/Koohoko/SynMut/issues
URL: https://github.com/Koohoko/SynMut