Package: XeniumIO
Type: Package
Title: Import and represent Xenium data from the 10X Xenium Analyzer
Version: 1.3.0
Authors@R: c(
    person("Marcel", "Ramos", , "[email protected]", c("aut", "cre"),
        c(ORCID = "0000-0002-3242-0582")
    ),
    person("Dario", "Righelli", role = "ctb"),
    person("Estella", "Dong", role = "ctb")
    )
Description: The package allows users to readily import spatial data
    obtained from the 10X Xenium Analyzer pipeline. Supported formats include
    'parquet', 'h5', and 'mtx' files. The package mainly represents data
    as SpatialExperiment objects.
License: Artistic-2.0
Depends: TENxIO, R (>= 4.5.0)
Imports:
    BiocBaseUtils,
    BiocGenerics,
    BiocIO,
    jsonlite,
    methods,
    S4Vectors,
    SingleCellExperiment,
    SpatialExperiment,
    SummarizedExperiment,
    VisiumIO
Suggests:
    arrow,
    BiocFileCache,
    BiocStyle,
    knitr,
    rmarkdown,
    tinytest
biocViews: Software, Infrastructure, DataImport, SingleCell, Spatial
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
BugReports: https://github.com/waldronlab/XeniumIO/issues
URL: https://github.com/waldronlab/XeniumIO
Collate: 
    'XeniumFile.R'
    'TENxXenium-class.R'
    'XeniumIO-package.R'
    'utilities.R'
Date: 2025-04-04