Package: scRNAseqApp
Title: A single-cell RNAseq Shiny app-package
Version: 1.11.0
Authors@R:
    c(person(given = "Jianhong",
             family = "Ou",
             role = c("aut", "cre"),
             email = "[email protected]",
             comment=c(ORCID="0000-0002-8652-2488")))
Description: The scRNAseqApp is a Shiny app package designed for interactive 
    visualization of single-cell data. It is an enhanced version derived from 
    the ShinyCell, repackaged to accommodate multiple datasets.
    The app enables users to visualize data containing various types of 
    information simultaneously, facilitating comprehensive analysis.
    Additionally, it includes a user management system to regulate database
    accessibility for different users.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
biocViews: Visualization, SingleCell, RNASeq
Depends:
    R (>= 4.3.0)
Imports:
    bibtex,
    bslib,
    circlize,
    ComplexHeatmap,
    colourpicker,
    data.table,
    DBI,
    DT,
    fs,
    GenomicRanges,
    GenomeInfoDb,
    ggdendro,
    ggforce,
    ggplot2,
    ggrepel,
    ggridges,
    grDevices,
    grid,
    gridExtra,
    htmltools,
    IRanges,
    jsonlite,
    Matrix,
    magrittr,
    methods,
    patchwork,
    plotly,
    RColorBrewer,
    RefManageR,
    reshape2,
    rhdf5,
    Rsamtools,
    RSQLite,
    rtracklayer,
    S4Vectors,
    scales,
    scrypt,
    Seurat,
    SeuratObject,
    shiny,
    shinyhelper,
    shinymanager,
    slingshot,
    SingleCellExperiment,
    sortable,
    stats,
    tools,
    xfun,
    xml2,
    utils
Suggests: rmarkdown, knitr, testthat, BiocStyle, shinytest2
Enhances:
    celldex,
    future,
    SingleR,
    SummarizedExperiment,
    tricycle
URL: https://github.com/jianhong/scRNAseqApp
BugReports: https://github.com/jianhong/scRNAseqApp/issues