Package: shinyDSP
Title: A Shiny App For Visualizing Nanostring GeoMx DSP Data
Version: 1.3.0
Description: 
    This package is a Shiny app for interactively analyzing and visualizing 
    Nanostring GeoMX Whole Transcriptome Atlas data. Users have the option of 
    exploring a sample data to explore this app's functionality. Regions of 
    interest (ROIs) can be filtered based on any user-provided metadata. Upon 
    taking two or more groups of interest, all pairwise and ANOVA-like testing 
    are automatically performed. Available ouputs include PCA, Volcano plots, 
    tables and heatmaps. Aesthetics of each output are highly customizable. 
Authors@R: 
    c(person("Seung J.", "Kim" , ,"[email protected]", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-5263-0758")),
    person("Marco", "Mura",  ,"[email protected]", role = c("aut","fnd"))
    )           
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: 
    AnnotationHub,
    BiocGenerics,
    bsicons,
    bslib,
    circlize,
    ComplexHeatmap,
    cowplot,
    dplyr,
    DT,
    edgeR,
    ExperimentHub,
    ggplot2,
    ggpubr,
    ggrepel,
    grDevices,
    grid,
    htmltools,
    limma,
    magrittr,
    pals,
    readr,
    S4Vectors,
    scales,
    scater,
    shiny,
    shinycssloaders,
    shinyjs,
    shinyvalidate,
    shinyWidgets,
    SingleCellExperiment,
    standR,
    stats,
    stringr,
    SummarizedExperiment,
    tibble,
    tidyr,
    utils,
    withr
biocViews: DifferentialExpression, GeneExpression, ShinyApps, Spatial, Transcriptomics
URL: https://github.com/kimsjune/shinyDSP, http://joonkim.ca/shinyDSP/
BugReports: https://github.com/kimsjune/shinyDSP/issues
Suggests: 
    BiocStyle,
    knitr,
    rmarkdown,
    shinytest2,
    spelling,
    svglite,
    testthat (>= 3.0.0)
Language: en-US
Depends: 
    R (>= 4.5)
Config/testthat/edition: 3
VignetteBuilder: knitr