Package: simPIC
Version: 1.5.3
Date: 2023-02-02
Type: Package
Title: Flexible simulation of paired-insertion counts for single-cell 
        ATAC-sequencing data
Authors@R: c(person("Sagrika", "Chugh", role=c("aut","cre"), 
           email = "[email protected]", 
           comment = c(ORCID = "0000-0002-8050-5214")),
           person("Heejung","Shim", role=c("aut")),
           person("Davis","McCarthy", role=c("aut")))
Depends: 
    R (>= 4.5.0),
    SingleCellExperiment
Imports: 
    BiocGenerics,
    checkmate (>= 2.0.0),
    fitdistrplus,
    matrixStats,
    actuar,
    Matrix,
    stats,
    SummarizedExperiment,
    rlang,
    S4Vectors,
    methods,
    scales,
    scuttle,
    edgeR,
    withr
Description: simPIC is a package for simulating single-cell ATAC-seq count data.
    It provides a user-friendly, well documented interface for data simulation.
    Functions are provided for parameter estimation, realistic scATAC-seq data 
    simulation, and comparing real and simulated datasets.
biocViews: SingleCell, ATACSeq, Software, Sequencing, ImmunoOncology, DataImport
License: GPL-3
Encoding: UTF-8
Suggests: 
    ggplot2 (>= 3.4.0),
    knitr,
    rmarkdown,
    BiocStyle,
    testthat (>= 3.0.0),
    scater,
    scran,
    magick
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Config/testthat/edition: 3
URL: https://github.com/sagrikachugh/simPIC 
BugReports: https://github.com/sagrikachugh/simPIC/issues