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Package: tidyCoverage
Title: Extract and aggregate genomic coverage over features of interest
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Version: 1.7.0
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Date: 2023-11-09
Authors@R:
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person("Jacques", "Serizay", , "[email protected]",
role = c("aut", "cre"))
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Description: `tidyCoverage` framework enables tidy manipulation
of collections of genomic tracks and features using
`tidySummarizedExperiment` methods. It facilitates the
extraction, aggregation and visualization of genomic coverage over
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individual or thousands of genomic loci, relying on `CoverageExperiment`
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and `AggregatedCoverage` classes. This accelerates the integration
of genomic track data in genomic analysis workflows.
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License: MIT + file LICENSE
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URL: https://github.com/js2264/tidyCoverage
BugReports: https://github.com/js2264/tidyCoverage/issues
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biocViews:
Software,
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Sequencing,
Coverage,
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Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends:
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R (>= 4.3.0),
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SummarizedExperiment
Imports:
S4Vectors,
IRanges,
GenomicRanges,
GenomeInfoDb,
BiocParallel,
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BiocIO,
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rtracklayer,
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methods,
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tidyr,
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ggplot2,
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dplyr,
fansi,
pillar,
rlang,
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scales,
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cli,
purrr,
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vctrs,
stats
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Suggests:
tidySummarizedExperiment,
plyranges,
TxDb.Hsapiens.UCSC.hg19.knownGene,
AnnotationHub,
GenomicFeatures,
BiocStyle,
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hues,
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knitr,
rmarkdown,
sessioninfo,
testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
LazyData: false
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