Package: tidyCoverage
Title: Extract and aggregate genomic coverage over features of interest
Version: 1.7.0
Date: 2023-11-09
Authors@R: 
    person("Jacques", "Serizay", , "jacquesserizay@gmail.com", 
        role = c("aut", "cre"))
Description: `tidyCoverage` framework enables tidy manipulation 
    of collections of genomic tracks and features using 
    `tidySummarizedExperiment` methods. It facilitates the 
    extraction, aggregation and visualization of genomic coverage over 
    individual or thousands of genomic loci, relying on `CoverageExperiment`
    and `AggregatedCoverage` classes. This accelerates the integration 
    of genomic track data in genomic analysis workflows. 
License: MIT + file LICENSE
URL: https://github.com/js2264/tidyCoverage
BugReports: https://github.com/js2264/tidyCoverage/issues
biocViews: 
    Software, 
    Sequencing, 
    Coverage, 
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: 
    R (>= 4.3.0),
    SummarizedExperiment
Imports: 
    S4Vectors, 
    IRanges,
    GenomicRanges,
    GenomeInfoDb, 
    BiocParallel, 
    BiocIO, 
    rtracklayer,
    methods,
    tidyr, 
    ggplot2,
    dplyr,
    fansi, 
    pillar, 
    rlang, 
    scales, 
    cli, 
    purrr, 
    vctrs, 
    stats
Suggests: 
    tidySummarizedExperiment,
    plyranges,
    TxDb.Hsapiens.UCSC.hg19.knownGene,
    AnnotationHub,
    GenomicFeatures, 
    BiocStyle,
    hues, 
    knitr,
    rmarkdown,
    sessioninfo,
    testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
LazyData: false