# Generated by roxygen2: do not edit by hand

S3method("BIC", MArrayLM)
S3method("BIC", MArrayLM2)
S3method("[", MArrayLM2)
S3method("as.data.frame", 'varPartResults')
S3method("logLik", MArrayLM)
S3method("logLik", MArrayLM2)
S3method("residuals", MArrayLM2)
S3method(BIC,MArrayLM)
S3method(BIC,MArrayLM2)
S3method(as.data.frame,varPartResults)
S3method(logLik,MArrayLM)
S3method(logLik,MArrayLM2)
export("[.MArrayLM2")
export(ESS)
export(applyQualityWeights)
export(augmentPriorCount)
export(calcVarPart)
export(canCorPairs)
export(colinearityScore)
export(deviation)
export(diffVar)
export(dream)
export(extractVarPart)
export(fitExtractVarPartModel)
export(fitVarPartModel)
export(getContrast)
export(getTreat)
export(get_prediction)
export(ggColorHue)
export(isRunableFormula)
export(makeContrastsDream)
export(mvTest)
export(plotCompareP)
export(plotContrasts)
export(plotCorrMatrix)
export(plotCorrStructure)
export(plotPercentBars)
export(plotStratify)
export(plotStratifyBy)
export(plotVarPart)
export(plotVarianceEstimates)
export(rdf)
export(rdf.merMod)
export(residuals.MArrayLM2)
export(shrinkageMetric)
export(sortCols)
export(topTable)
export(varPartConfInf)
export(vcovSqrt)
export(voomWithDreamWeights)
exportClasses(MArrayLM2)
exportClasses(VarParCIList)
exportClasses(VarParFitList)
exportClasses(mvTest_input)
exportClasses(varParFrac)
exportClasses(varPartResults)
exportMethods(ESS)
exportMethods(as.matrix)
exportMethods(calcVarPart)
exportMethods(deviation)
exportMethods(diffVar)
exportMethods(eBayes)
exportMethods(fitExtractVarPartModel)
exportMethods(fitVarPartModel)
exportMethods(getTreat)
exportMethods(get_prediction)
exportMethods(hatvalues)
exportMethods(mvTest)
exportMethods(plotPercentBars)
exportMethods(plotVarPart)
exportMethods(residuals)
exportMethods(sortCols)
exportMethods(topTable)
exportMethods(vcov)
exportMethods(vcovSqrt)
import(Rdpack)
import(ggplot2)
import(limma)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,exprs)
importFrom(BiocParallel,"bpstopOnError<-")
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bpiterate)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpok)
importFrom(BiocParallel,bptry)
importFrom(MASS,ginv)
importFrom(Matrix,Diagonal)
importFrom(Matrix,bdiag)
importFrom(Matrix,crossprod)
importFrom(Matrix,diag)
importFrom(Matrix,drop0)
importFrom(Matrix,solve)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(Matrix,tcrossprod)
importFrom(RhpcBLASctl,omp_get_max_threads)
importFrom(RhpcBLASctl,omp_set_num_threads)
importFrom(aod,negbin)
importFrom(corpcor,estimate.lambda)
importFrom(fANCOVA,loess.as)
importFrom(gplots,heatmap.2)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,hcl)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,hist)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(iterators,icount)
importFrom(iterators,iter)
importFrom(iterators,nextElem)
importFrom(limma,asMatrixWeights)
importFrom(limma,eBayes)
importFrom(lme4,VarCorr)
importFrom(lme4,bootMer)
importFrom(lme4,findbars)
importFrom(lme4,fixef)
importFrom(lme4,getME)
importFrom(lme4,isGLMM)
importFrom(lme4,isSingular)
importFrom(lme4,lFormula)
importFrom(lme4,lmer)
importFrom(lme4,lmerControl)
importFrom(lme4,nobars)
importFrom(lme4,refit)
importFrom(lme4,subbars)
importFrom(lmerTest,as_lmerModLmerTest)
importFrom(lmerTest,contest)
importFrom(matrixStats,colSums2)
importFrom(matrixStats,rowSums2)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(pbkrtest,get_SigmaG)
importFrom(pbkrtest,vcovAdj.lmerMod)
importFrom(remaCor,LS)
importFrom(remaCor,LS.empirical)
importFrom(remaCor,RE2C)
importFrom(remaCor,hotelling)
importFrom(reshape2,melt)
importFrom(rlang,caller_env)
importFrom(rlang,enexprs)
importFrom(rlang,eval_tidy)
importFrom(rlang,new_environment)
importFrom(rlang,parse_expr)
importFrom(scales,rescale)
importFrom(stats,BIC)
importFrom(stats,anova)
importFrom(stats,approxfun)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,cancor)
importFrom(stats,coef)
importFrom(stats,coefficients)
importFrom(stats,cov2cor)
importFrom(stats,density)
importFrom(stats,dgamma)
importFrom(stats,dist)
importFrom(stats,family)
importFrom(stats,fitted.values)
importFrom(stats,formula)
importFrom(stats,getCall)
importFrom(stats,hatvalues)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,logLik)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,model.matrix.lm)
importFrom(stats,order.dendrogram)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,pf)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,qf)
importFrom(stats,qnorm)
importFrom(stats,qt)
importFrom(stats,quantile)
importFrom(stats,reformulate)
importFrom(stats,reorder)
importFrom(stats,residuals)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,sigma)
importFrom(stats,terms)
importFrom(stats,update)
importFrom(stats,var)
importFrom(stats,vcov)
importFrom(stats,weighted.mean)
importFrom(stats,weights)
importFrom(utils,combn)
importFrom(utils,object.size)