intermediate/spatial_transformer_tutorial

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Spatial Transformer Networks Tutorial

Created On: Nov 08, 2017 | Last Updated: Jan 19, 2024 | Last Verified: Nov 05, 2024

Author: Ghassen HAMROUNI

In this tutorial, you will learn how to augment your network using a visual attention mechanism called spatial transformer networks. You can read more about the spatial transformer networks in the DeepMind paper

Spatial transformer networks are a generalization of differentiable attention to any spatial transformation. Spatial transformer networks (STN for short) allow a neural network to learn how to perform spatial transformations on the input image in order to enhance the geometric invariance of the model. For example, it can crop a region of interest, scale and correct the orientation of an image. It can be a useful mechanism because CNNs are not invariant to rotation and scale and more general affine transformations.

One of the best things about STN is the ability to simply plug it into any existing CNN with very little modification.

# License: BSD
# Author: Ghassen Hamrouni

import torch
import torch.nn as nn
import torch.nn.functional as F
import torch.optim as optim
import torchvision
from torchvision import datasets, transforms
import matplotlib.pyplot as plt
import numpy as np

plt.ion()   # interactive mode

<contextlib.ExitStack object at 0x7fae13b56ce0>

Loading the data

In this post we experiment with the classic MNIST dataset. Using a standard convolutional network augmented with a spatial transformer network.

from six.moves import urllib
opener = urllib.request.build_opener()
opener.addheaders = [('User-agent', 'Mozilla/5.0')]
urllib.request.install_opener(opener)

device = torch.device("cuda" if torch.cuda.is_available() else "cpu")

# Training dataset
train_loader = torch.utils.data.DataLoader(
    datasets.MNIST(root='.', train=True, download=True,
                   transform=transforms.Compose([
                       transforms.ToTensor(),
                       transforms.Normalize((0.1307,), (0.3081,))
                   ])), batch_size=64, shuffle=True, num_workers=4)
# Test dataset
test_loader = torch.utils.data.DataLoader(
    datasets.MNIST(root='.', train=False, transform=transforms.Compose([
        transforms.ToTensor(),
        transforms.Normalize((0.1307,), (0.3081,))
    ])), batch_size=64, shuffle=True, num_workers=4)

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Depicting spatial transformer networks

Spatial transformer networks boils down to three main components :

• The localization network is a regular CNN which regresses the transformation parameters. The transformation is never learned explicitly from this dataset, instead the network learns automatically the spatial transformations that enhances the global accuracy.

• The grid generator generates a grid of coordinates in the input image corresponding to each pixel from the output image.

• The sampler uses the parameters of the transformation and applies it to the input image.

Note

We need the latest version of PyTorch that contains affine_grid and grid_sample modules.

class Net(nn.Module):
    def __init__(self):
        super(Net, self).__init__()
        self.conv1 = nn.Conv2d(1, 10, kernel_size=5)
        self.conv2 = nn.Conv2d(10, 20, kernel_size=5)
        self.conv2_drop = nn.Dropout2d()
        self.fc1 = nn.Linear(320, 50)
        self.fc2 = nn.Linear(50, 10)

        # Spatial transformer localization-network
        self.localization = nn.Sequential(
            nn.Conv2d(1, 8, kernel_size=7),
            nn.MaxPool2d(2, stride=2),
            nn.ReLU(True),
            nn.Conv2d(8, 10, kernel_size=5),
            nn.MaxPool2d(2, stride=2),
            nn.ReLU(True)
        )

        # Regressor for the 3 * 2 affine matrix
        self.fc_loc = nn.Sequential(
            nn.Linear(10 * 3 * 3, 32),
            nn.ReLU(True),
            nn.Linear(32, 3 * 2)
        )

        # Initialize the weights/bias with identity transformation
        self.fc_loc[2].weight.data.zero_()
        self.fc_loc[2].bias.data.copy_(torch.tensor([1, 0, 0, 0, 1, 0], dtype=torch.float))

    # Spatial transformer network forward function
    def stn(self, x):
        xs = self.localization(x)
        xs = xs.view(-1, 10 * 3 * 3)
        theta = self.fc_loc(xs)
        theta = theta.view(-1, 2, 3)

        grid = F.affine_grid(theta, x.size())
        x = F.grid_sample(x, grid)

        return x

    def forward(self, x):
        # transform the input
        x = self.stn(x)

        # Perform the usual forward pass
        x = F.relu(F.max_pool2d(self.conv1(x), 2))
        x = F.relu(F.max_pool2d(self.conv2_drop(self.conv2(x)), 2))
        x = x.view(-1, 320)
        x = F.relu(self.fc1(x))
        x = F.dropout(x, training=self.training)
        x = self.fc2(x)
        return F.log_softmax(x, dim=1)


model = Net().to(device)

Training the model

Now, let’s use the SGD algorithm to train the model. The network is learning the classification task in a supervised way. In the same time the model is learning STN automatically in an end-to-end fashion.

optimizer = optim.SGD(model.parameters(), lr=0.01)


def train(epoch):
    model.train()
    for batch_idx, (data, target) in enumerate(train_loader):
        data, target = data.to(device), target.to(device)

        optimizer.zero_grad()
        output = model(data)
        loss = F.nll_loss(output, target)
        loss.backward()
        optimizer.step()
        if batch_idx % 500 == 0:
            print('Train Epoch: {} [{}/{} ({:.0f}%)]\tLoss: {:.6f}'.format(
                epoch, batch_idx * len(data), len(train_loader.dataset),
                100. * batch_idx / len(train_loader), loss.item()))
#
# A simple test procedure to measure the STN performances on MNIST.
#


def test():
    with torch.no_grad():
        model.eval()
        test_loss = 0
        correct = 0
        for data, target in test_loader:
            data, target = data.to(device), target.to(device)
            output = model(data)

            # sum up batch loss
            test_loss += F.nll_loss(output, target, size_average=False).item()
            # get the index of the max log-probability
            pred = output.max(1, keepdim=True)[1]
            correct += pred.eq(target.view_as(pred)).sum().item()

        test_loss /= len(test_loader.dataset)
        print('\nTest set: Average loss: {:.4f}, Accuracy: {}/{} ({:.0f}%)\n'
              .format(test_loss, correct, len(test_loader.dataset),
                      100. * correct / len(test_loader.dataset)))

Visualizing the STN results

Now, we will inspect the results of our learned visual attention mechanism.

We define a small helper function in order to visualize the transformations while training.

def convert_image_np(inp):
    """Convert a Tensor to numpy image."""
    inp = inp.numpy().transpose((1, 2, 0))
    mean = np.array([0.485, 0.456, 0.406])
    std = np.array([0.229, 0.224, 0.225])
    inp = std * inp + mean
    inp = np.clip(inp, 0, 1)
    return inp

# We want to visualize the output of the spatial transformers layer
# after the training, we visualize a batch of input images and
# the corresponding transformed batch using STN.


def visualize_stn():
    with torch.no_grad():
        # Get a batch of training data
        data = next(iter(test_loader))[0].to(device)

        input_tensor = data.cpu()
        transformed_input_tensor = model.stn(data).cpu()

        in_grid = convert_image_np(
            torchvision.utils.make_grid(input_tensor))

        out_grid = convert_image_np(
            torchvision.utils.make_grid(transformed_input_tensor))

        # Plot the results side-by-side
        f, axarr = plt.subplots(1, 2)
        axarr[0].imshow(in_grid)
        axarr[0].set_title('Dataset Images')

        axarr[1].imshow(out_grid)
        axarr[1].set_title('Transformed Images')

for epoch in range(1, 20 + 1):
    train(epoch)
    test()

# Visualize the STN transformation on some input batch
visualize_stn()

plt.ioff()
plt.show()

/usr/local/lib/python3.10/dist-packages/torch/nn/functional.py:5167: UserWarning:

Default grid_sample and affine_grid behavior has changed to align_corners=False since 1.3.0. Please specify align_corners=True if the old behavior is desired. See the documentation of grid_sample for details.

/usr/local/lib/python3.10/dist-packages/torch/nn/functional.py:5100: UserWarning:

Default grid_sample and affine_grid behavior has changed to align_corners=False since 1.3.0. Please specify align_corners=True if the old behavior is desired. See the documentation of grid_sample for details.

Train Epoch: 1 [0/60000 (0%)]   Loss: 2.306351
Train Epoch: 1 [32000/60000 (53%)]      Loss: 0.793769
/usr/local/lib/python3.10/dist-packages/torch/nn/_reduction.py:51: UserWarning:

size_average and reduce args will be deprecated, please use reduction='sum' instead.


Test set: Average loss: 0.2365, Accuracy: 9322/10000 (93%)

Train Epoch: 2 [0/60000 (0%)]   Loss: 0.370284
Train Epoch: 2 [32000/60000 (53%)]      Loss: 0.535110

Test set: Average loss: 0.1386, Accuracy: 9618/10000 (96%)

Train Epoch: 3 [0/60000 (0%)]   Loss: 0.766150
Train Epoch: 3 [32000/60000 (53%)]      Loss: 0.190207

Test set: Average loss: 0.1317, Accuracy: 9580/10000 (96%)

Train Epoch: 4 [0/60000 (0%)]   Loss: 0.472512
Train Epoch: 4 [32000/60000 (53%)]      Loss: 0.175273

Test set: Average loss: 0.0793, Accuracy: 9744/10000 (97%)

Train Epoch: 5 [0/60000 (0%)]   Loss: 0.254059
Train Epoch: 5 [32000/60000 (53%)]      Loss: 0.188492

Test set: Average loss: 0.0690, Accuracy: 9795/10000 (98%)

Train Epoch: 6 [0/60000 (0%)]   Loss: 0.124899
Train Epoch: 6 [32000/60000 (53%)]      Loss: 0.160689

Test set: Average loss: 0.0804, Accuracy: 9750/10000 (98%)

Train Epoch: 7 [0/60000 (0%)]   Loss: 0.208632
Train Epoch: 7 [32000/60000 (53%)]      Loss: 0.225233

Test set: Average loss: 0.0567, Accuracy: 9830/10000 (98%)

Train Epoch: 8 [0/60000 (0%)]   Loss: 0.193943
Train Epoch: 8 [32000/60000 (53%)]      Loss: 0.469787

Test set: Average loss: 0.0596, Accuracy: 9815/10000 (98%)

Train Epoch: 9 [0/60000 (0%)]   Loss: 0.168394
Train Epoch: 9 [32000/60000 (53%)]      Loss: 0.137098

Test set: Average loss: 0.0607, Accuracy: 9813/10000 (98%)

Train Epoch: 10 [0/60000 (0%)]  Loss: 0.207166
Train Epoch: 10 [32000/60000 (53%)]     Loss: 0.101286

Test set: Average loss: 0.0489, Accuracy: 9857/10000 (99%)

Train Epoch: 11 [0/60000 (0%)]  Loss: 0.085655
Train Epoch: 11 [32000/60000 (53%)]     Loss: 0.108202

Test set: Average loss: 0.0467, Accuracy: 9861/10000 (99%)

Train Epoch: 12 [0/60000 (0%)]  Loss: 0.110595
Train Epoch: 12 [32000/60000 (53%)]     Loss: 0.135883

Test set: Average loss: 0.0456, Accuracy: 9854/10000 (99%)

Train Epoch: 13 [0/60000 (0%)]  Loss: 0.077484
Train Epoch: 13 [32000/60000 (53%)]     Loss: 0.038071

Test set: Average loss: 0.0437, Accuracy: 9863/10000 (99%)

Train Epoch: 14 [0/60000 (0%)]  Loss: 0.053911
Train Epoch: 14 [32000/60000 (53%)]     Loss: 0.286013

Test set: Average loss: 0.0440, Accuracy: 9864/10000 (99%)

Train Epoch: 15 [0/60000 (0%)]  Loss: 0.090888
Train Epoch: 15 [32000/60000 (53%)]     Loss: 0.043591

Test set: Average loss: 0.0421, Accuracy: 9865/10000 (99%)

Train Epoch: 16 [0/60000 (0%)]  Loss: 0.030265
Train Epoch: 16 [32000/60000 (53%)]     Loss: 0.183157

Test set: Average loss: 0.0414, Accuracy: 9863/10000 (99%)

Train Epoch: 17 [0/60000 (0%)]  Loss: 0.118340
Train Epoch: 17 [32000/60000 (53%)]     Loss: 0.038843

Test set: Average loss: 0.0442, Accuracy: 9857/10000 (99%)

Train Epoch: 18 [0/60000 (0%)]  Loss: 0.035530
Train Epoch: 18 [32000/60000 (53%)]     Loss: 0.060340

Test set: Average loss: 0.0357, Accuracy: 9880/10000 (99%)

Train Epoch: 19 [0/60000 (0%)]  Loss: 0.136247
Train Epoch: 19 [32000/60000 (53%)]     Loss: 0.025959

Test set: Average loss: 0.0385, Accuracy: 9877/10000 (99%)

Train Epoch: 20 [0/60000 (0%)]  Loss: 0.347695
Train Epoch: 20 [32000/60000 (53%)]     Loss: 0.045195

Test set: Average loss: 0.0682, Accuracy: 9796/10000 (98%)