PyGRASS implementation of bedtools tutorial

This is a set of examples on how to use PyGRASS to implement the bedtools tutorial. The original tutorial can be found at the bedtools tutorial.

The tutorial shows how to use PyGRASS to implement the equivalent operations.

Preparation

In order to make the tutorial actually work, you need a few preparation steps:

• Download the data used in the tutorial. This can be done by running the script get-data.sh under this directory.

• Configure the environment variables to use the local build of PyGRASS. This can be done by running the following command:

source build-and-env.sh

After these steps, you should be able to run the tutorial.

Each example is corresponding to one example in the bedtools tutorial.