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77<h2 >Input:</h2 >
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9- - Pseudomonas_KT2240.csv is the annotated genome
9+ - ** Pseudomonas_KT2240.csv** is the annotated genome
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11- - Pseudomonas_KT2240.txt is the genome of the organism in FASTA format
11+ - ** Pseudomonas_KT2240.txt** is the genome of the organism in FASTA format
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13- - HC00422648 is the directory with an example of sequencing output reads with a txt extension
13+ - ** HC00422648** is the directory with an example of sequencing output reads with a txt extension
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1515<h2 >Output:</h2 >
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17- - all_seq_aligned.tsv / all_seq_alligned.txt: tabular output of the BLAST with added header
17+ - ** all_seq_aligned.tsv** / ** all_seq_alligned.txt** : tabular output of the BLAST with added header
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19- - table_reads_genes_description.csv: final table in comma sepataed values format
19+ - ** table_reads_genes_description.csv** : final table in comma sepataed values format
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21- - all_seq_aligned.sam: sam output of the BLAST
21+ -** all_seq_aligned.sam** : sam output of the BLAST
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