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Commits on Jun 20, 2025

• VariantAnnotation 1.55.1: Depends on Seqinfo instead of GenomeInfoDb

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Commits on Apr 15, 2025

• bump x.y.z version to odd y following creation of RELEASE_3_21 branch

  

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• bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

  

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Commits on Jan 7, 2025

• VariantAnnotation 1.53.1

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Commits on Oct 29, 2024

• bump x.y.z version to odd y following creation of RELEASE_3_20 branch

  jwokaty

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• bump x.y.z version to even y prior to creation of RELEASE_3_20 branch

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Commits on Oct 23, 2024

• block a test that thwarts propagation for bioc 3.20, but seems itself in error

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Commits on Sep 25, 2024

• VariantAnnotation 1.51.1

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Commits on Apr 30, 2024

• bump x.y.z version to odd y following creation of RELEASE_3_19 branch

  jwokaty

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• bump x.y.z version to even y prior to creation of RELEASE_3_19 branch

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Commits on Mar 26, 2024

• The makeTxDb*() functions have moved from GenomicFeatures to txdbmaker

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Commits on Jan 26, 2024

• tools from ensemblVEP REST API are added here to permit deprecation of ensemblVEP

  vjcitn

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Commits on Jan 12, 2024

• Fix gcc's "format-security" warning

  hpages

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Commits on Jan 10, 2024

• addressing issue 79 by correcting the value of Number in info(header()) for ExpandedVCF instance

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• removing non-standard GATK-related records from extdata/hapmap_exome_chr22.vcf, then bgzip and tabix indexing

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Commits on Nov 15, 2023

• Fix long-standing bug in .Call ENTRY POINT make_vcf_geno

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Commits on Oct 31, 2023

• Version bump to trigger rebuilt of binaries against Rhtslib 2.99.0

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Commits on Oct 24, 2023

• bump x.y.z version to odd y following creation of RELEASE_3_18 branch

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• bump x.y.z version to even y prior to creation of RELEASE_3_18 branch

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Commits on Jun 2, 2023

• Bump version to 1.47.1

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• Convert VariantAnnotation.Rnw, filterVcf.Rnw to VariantAnnotation.Rmd, filterVcf.Rmd (#67)

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Commits on Apr 25, 2023

• bump x.y.z version to odd y following creation of RELEASE_3_17 branch

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• bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

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Commits on Feb 14, 2023

• Add updateObject() method for VCF objects

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Commits on Nov 1, 2022

• bump x.y.z version to odd y following creation of RELEASE_3_16 branch

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• bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

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Commits on Aug 11, 2022

• Replace defunct SNPlocs.Hsapiens.dbSNP.20101109 with SNPlocs.Hsapiens.dbSNP144.GRCh37

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Commits on May 13, 2022

• Version bump

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Commits on May 6, 2022

• Version bump for approved PRs

  Kayla-Morrell

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• Merge pull request #60 from jmarshall/structured-vcfhdr

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• Merge pull request #58 from jmarshall/typo-fix

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Commits on May 4, 2022

• Correct META API change version numbers to 1.27.5/.6

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• Write solo ##contig/##FILTER/etc lines as structured headers

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Commits on Apr 26, 2022

• bump x.y.z version to odd y following creation of RELEASE_3_15 branch

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• bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

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