Summary

Continue migrating skills toward the shared reproducibility API.

Context

ClawBio already treats reproducibility bundles as a core part of skill outputs. The shared helpers in clawbio/common/reproducibility.py provide a cleaner and more consistent way to generate these artifacts.

Proposed improvement

Audit remaining skills and migrate legacy or custom reproducibility logic toward the shared helpers where appropriate:

• ReproPath
• ReproCommand
• write_portable_commands_sh
• write_environment_yml
• write_checksums

Acceptance criteria

• Remaining skills are reviewed for reproducibility consistency
• Skills that still use custom bundle logic are either migrated or documented
• Bundle structure remains consistent across the project
• Tests confirm that migrated skills still generate expected artifacts

Why this helps

This reduces duplicated logic and keeps reproducibility behavior consistent across the ClawBio skill library.