diff --git a/docs/api/changelog.rst b/docs/api/changelog.rst index f75a24f78..6dafb8e42 100644 --- a/docs/api/changelog.rst +++ b/docs/api/changelog.rst @@ -91,6 +91,10 @@ Fixed like MetaSWAP expects. - Models imported with :meth:`imod.msw.MetaSwapModel.from_imod5_data` can be written with ``validate`` set to True. +- Fixed performance issue when coverting very large wells (>10k) with + :meth:`imod.mf6.Well.to_mf6_pkg` and :meth:`imod.mf6.LayeredWell.to_mf6_pkg`, + such as those created with :meth:`imod.mf6.LayeredWell.from_imod5_cap_data` + for a large grid. [1.0.0rc1] - 2024-12-20 diff --git a/imod/mf6/wel.py b/imod/mf6/wel.py index 6f16577bc..686e7bf56 100644 --- a/imod/mf6/wel.py +++ b/imod/mf6/wel.py @@ -531,12 +531,13 @@ def _to_mf6_pkg( def gather_filtered_well_ids( self, well_data_filtered: pd.DataFrame | xr.Dataset, well_data: pd.DataFrame ) -> list[str]: - filtered_well_ids = [ - id - for id in well_data["id"].unique() - if id not in well_data_filtered["id"].values - ] - return filtered_well_ids + # Work around performance issue with xarray isin for large datasets. + if isinstance(well_data_filtered, xr.Dataset): + filtered_ids = well_data_filtered["id"].to_dataframe()["id"] + else: + filtered_ids = well_data_filtered["id"] + is_missing_id = ~well_data["id"].isin(filtered_ids.unique()) + return well_data["id"].loc[is_missing_id].unique() def to_mf6_package_information( self, filtered_wells: list[str], reason_text: str diff --git a/imod/tests/conftest.py b/imod/tests/conftest.py index ce2bf4bb4..6c433a9cb 100644 --- a/imod/tests/conftest.py +++ b/imod/tests/conftest.py @@ -24,6 +24,7 @@ from .fixtures.flow_transport_simulation_fixture import flow_transport_simulation from .fixtures.imod5_cap_data import ( cap_data_sprinkling_grid, + cap_data_sprinkling_grid__big, cap_data_sprinkling_points, ) from .fixtures.imod5_well_data import ( diff --git a/imod/tests/fixtures/imod5_cap_data.py b/imod/tests/fixtures/imod5_cap_data.py index 3380bbdb7..e74f1664c 100644 --- a/imod/tests/fixtures/imod5_cap_data.py +++ b/imod/tests/fixtures/imod5_cap_data.py @@ -6,9 +6,9 @@ from imod.typing import Imod5DataDict -def zeros_grid(): - x = [1.0, 2.0, 3.0] - y = [3.0, 2.0, 1.0] +def zeros_grid(n): + x = np.arange(n, dtype=float) + 1.0 + y = np.arange(n, dtype=float)[::-1] + 1.0 dx = 1.0 dy = -1.0 @@ -19,13 +19,19 @@ def zeros_grid(): return xr.DataArray(data, coords=coords, dims=("y", "x")) +def zeros_dask_grid(n): + da = zeros_grid(n) + return da.chunk({"x": n, "y": n}) + + @pytest.fixture(scope="function") def cap_data_sprinkling_grid() -> Imod5DataDict: - boundary = zeros_grid() + 1 - wetted_area = zeros_grid() + 0.5 - urban_area = zeros_grid() + 0.25 + n = 3 + boundary = zeros_grid(n) + 1 + wetted_area = zeros_grid(n) + 0.5 + urban_area = zeros_grid(n) + 0.25 - artificial_rch_type = zeros_grid() + artificial_rch_type = zeros_grid(n) artificial_rch_type[:, 1] = 1 artificial_rch_type[:, 2] = 2 layer = xr.ones_like(artificial_rch_type) @@ -43,13 +49,37 @@ def cap_data_sprinkling_grid() -> Imod5DataDict: return {"cap": cap_data} +@pytest.fixture(scope="function") +def cap_data_sprinkling_grid__big() -> Imod5DataDict: + n = 1000 + boundary = zeros_dask_grid(n) + 1 + wetted_area = zeros_dask_grid(n) + 0.5 + urban_area = zeros_dask_grid(n) + 0.25 + + artificial_rch_type = zeros_dask_grid(n) + 2.0 + layer = xr.ones_like(artificial_rch_type) + layer[:, 1] = 2 + + cap_data = { + "boundary": boundary, + "wetted_area": wetted_area, + "urban_area": urban_area, + "artificial_recharge": artificial_rch_type, + "artificial_recharge_layer": layer, + "artificial_recharge_capacity": xr.DataArray(25.0), + } + + return {"cap": cap_data} + + @pytest.fixture(scope="function") def cap_data_sprinkling_grid_with_layer() -> Imod5DataDict: - boundary = zeros_grid() + 1 - wetted_area = zeros_grid() + 0.5 - urban_area = zeros_grid() + 0.25 + n = 3 + boundary = zeros_grid(n) + 1 + wetted_area = zeros_grid(n) + 0.5 + urban_area = zeros_grid(n) + 0.25 - artificial_rch_type = zeros_grid() + artificial_rch_type = zeros_grid(n) artificial_rch_type[:, 1] = 1 artificial_rch_type[:, 2] = 2 layer = xr.ones_like(artificial_rch_type) @@ -69,11 +99,12 @@ def cap_data_sprinkling_grid_with_layer() -> Imod5DataDict: @pytest.fixture(scope="function") def cap_data_sprinkling_points() -> Imod5DataDict: - boundary = zeros_grid() + 1 - wetted_area = zeros_grid() + 0.5 - urban_area = zeros_grid() + 0.25 + n = 3 + boundary = zeros_grid(n) + 1 + wetted_area = zeros_grid(n) + 0.5 + urban_area = zeros_grid(n) + 0.25 - artificial_rch_type = zeros_grid() + artificial_rch_type = zeros_grid(n) artificial_rch_type[:, 1] = 3000 artificial_rch_type[:, 2] = 4000 diff --git a/imod/tests/test_mf6/test_mf6_wel.py b/imod/tests/test_mf6/test_mf6_wel.py index 3b5f27fe9..166cde3a8 100644 --- a/imod/tests/test_mf6/test_mf6_wel.py +++ b/imod/tests/test_mf6/test_mf6_wel.py @@ -1255,6 +1255,20 @@ def test_from_imod5_cap_data__grid(cap_data_sprinkling_grid): np.testing.assert_array_equal(ds["y"].to_numpy(), expected_y) +@pytest.mark.timeout(300) +def test_from_imod5_cap_data__big_grid(cap_data_sprinkling_grid__big): + """Test if performance is acceptable for large grids.""" + # Arrange + bnd_2d = cap_data_sprinkling_grid__big["cap"]["boundary"] + layer = xr.DataArray([1, 1], coords={"layer": [1, 2]}, dims=["layer"]) + bnd = layer * bnd_2d + # Act + well = LayeredWell.from_imod5_cap_data(cap_data_sprinkling_grid__big) + mf6_wel = well.to_mf6_pkg(bnd.astype(bool), bnd, bnd, bnd) + # Assert + assert mf6_wel.dataset.sizes["ncellid"] == bnd_2d.size + + def test_from_imod5_cap_data__points(cap_data_sprinkling_points): with pytest.raises(NotImplementedError): LayeredWell.from_imod5_cap_data(cap_data_sprinkling_points) diff --git a/pixi.lock b/pixi.lock index 619eb0a9f..96187461f 100644 --- a/pixi.lock +++ b/pixi.lock @@ -369,6 +369,7 @@ environments: - 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__osx >=10.13 - aws-c-common >=0.10.6,<0.10.7.0a0 - openssl >=3.3.1,<4.0a0 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -4918,8 +4835,6 @@ packages: - __osx >=11.0 - aws-c-common >=0.10.6,<0.10.7.0a0 - openssl >=3.3.1,<4.0a0 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -4934,8 +4849,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -4947,8 +4860,6 @@ packages: depends: - __glibc >=2.17,<3.0.a0 - libgcc >=13 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -4959,8 +4870,6 @@ packages: md5: 9f0bbd4a339c01ec81d7e19cbb9ad2ed depends: - __osx >=10.13 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -4971,8 +4880,6 @@ packages: md5: 145e5b4c9702ed279d7d68aaf096f77d depends: - __osx >=11.0 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -4985,8 +4892,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -4999,8 +4904,6 @@ packages: - __glibc >=2.17,<3.0.a0 - aws-c-common >=0.10.6,<0.10.7.0a0 - libgcc >=13 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -5012,8 +4915,6 @@ packages: depends: - __osx >=10.13 - aws-c-common >=0.10.6,<0.10.7.0a0 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5025,8 +4926,6 @@ packages: depends: - __osx >=11.0 - aws-c-common >=0.10.6,<0.10.7.0a0 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5040,8 +4939,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -5057,8 +4954,6 @@ packages: - aws-checksums >=0.2.2,<0.2.3.0a0 - libgcc >=13 - libstdcxx >=13 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -5073,8 +4968,6 @@ packages: - aws-c-io >=0.15.3,<0.15.4.0a0 - aws-checksums >=0.2.2,<0.2.3.0a0 - libcxx >=18 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5089,8 +4982,6 @@ packages: - aws-c-io >=0.15.3,<0.15.4.0a0 - aws-checksums >=0.2.2,<0.2.3.0a0 - libcxx >=18 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5106,8 +4997,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -5123,8 +5012,6 @@ packages: - aws-c-compression >=0.3.0,<0.3.1.0a0 - aws-c-io >=0.15.3,<0.15.4.0a0 - libgcc >=13 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -5139,8 +5026,6 @@ packages: - aws-c-common >=0.10.6,<0.10.7.0a0 - aws-c-compression >=0.3.0,<0.3.1.0a0 - aws-c-io >=0.15.3,<0.15.4.0a0 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5155,8 +5040,6 @@ packages: - aws-c-common >=0.10.6,<0.10.7.0a0 - aws-c-compression >=0.3.0,<0.3.1.0a0 - aws-c-io >=0.15.3,<0.15.4.0a0 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5173,8 +5056,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -5189,8 +5070,6 @@ packages: - aws-c-common >=0.10.6,<0.10.7.0a0 - libgcc >=13 - s2n >=1.5.11,<1.5.12.0a0 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -5203,8 +5082,6 @@ packages: - __osx >=10.13 - aws-c-cal >=0.8.1,<0.8.2.0a0 - aws-c-common >=0.10.6,<0.10.7.0a0 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5217,8 +5094,6 @@ packages: - __osx >=11.0 - aws-c-cal >=0.8.1,<0.8.2.0a0 - aws-c-common >=0.10.6,<0.10.7.0a0 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5233,8 +5108,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -5249,8 +5122,6 @@ packages: - aws-c-http >=0.9.2,<0.9.3.0a0 - aws-c-io >=0.15.3,<0.15.4.0a0 - libgcc >=13 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -5264,8 +5135,6 @@ packages: - aws-c-common >=0.10.6,<0.10.7.0a0 - aws-c-http >=0.9.2,<0.9.3.0a0 - aws-c-io >=0.15.3,<0.15.4.0a0 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5279,8 +5148,6 @@ packages: - aws-c-common >=0.10.6,<0.10.7.0a0 - aws-c-http >=0.9.2,<0.9.3.0a0 - aws-c-io >=0.15.3,<0.15.4.0a0 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5296,8 +5163,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -5316,8 +5181,6 @@ packages: - aws-checksums >=0.2.2,<0.2.3.0a0 - libgcc >=13 - openssl >=3.4.0,<4.0a0 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -5334,8 +5197,6 @@ packages: - aws-c-http >=0.9.2,<0.9.3.0a0 - aws-c-io >=0.15.3,<0.15.4.0a0 - aws-checksums >=0.2.2,<0.2.3.0a0 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5352,8 +5213,6 @@ packages: - aws-c-http >=0.9.2,<0.9.3.0a0 - aws-c-io >=0.15.3,<0.15.4.0a0 - aws-checksums >=0.2.2,<0.2.3.0a0 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5372,8 +5231,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -5386,8 +5243,6 @@ packages: - __glibc >=2.17,<3.0.a0 - aws-c-common >=0.10.6,<0.10.7.0a0 - libgcc >=13 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -5399,8 +5254,6 @@ packages: depends: - __osx >=10.13 - aws-c-common >=0.10.6,<0.10.7.0a0 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5412,8 +5265,6 @@ packages: depends: - __osx >=11.0 - aws-c-common >=0.10.6,<0.10.7.0a0 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5427,8 +5278,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -5441,8 +5290,6 @@ packages: - __glibc >=2.17,<3.0.a0 - aws-c-common >=0.10.6,<0.10.7.0a0 - libgcc >=13 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -5454,8 +5301,6 @@ packages: depends: - __osx >=10.13 - aws-c-common >=0.10.6,<0.10.7.0a0 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5467,8 +5312,6 @@ packages: depends: - __osx >=11.0 - aws-c-common >=0.10.6,<0.10.7.0a0 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5482,8 +5325,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -5505,8 +5346,6 @@ packages: - aws-c-sdkutils >=0.2.2,<0.2.3.0a0 - libgcc >=13 - libstdcxx >=13 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -5527,8 +5366,6 @@ packages: - aws-c-s3 >=0.7.9,<0.7.10.0a0 - aws-c-sdkutils >=0.2.2,<0.2.3.0a0 - libcxx >=18 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5549,8 +5386,6 @@ packages: - aws-c-s3 >=0.7.9,<0.7.10.0a0 - aws-c-sdkutils >=0.2.2,<0.2.3.0a0 - libcxx >=18 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5572,8 +5407,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -5593,8 +5426,6 @@ packages: - libstdcxx >=13 - libzlib >=1.3.1,<2.0a0 - openssl >=3.4.0,<4.0a0 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: [] @@ -5613,8 +5444,6 @@ packages: - libcxx >=18 - libzlib >=1.3.1,<2.0a0 - openssl >=3.4.0,<4.0a0 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5633,8 +5462,6 @@ packages: - libcxx >=18 - libzlib >=1.3.1,<2.0a0 - openssl >=3.4.0,<4.0a0 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: [] @@ -5652,8 +5479,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: [] @@ -5668,8 +5493,6 @@ packages: - libgcc >=13 - libstdcxx >=13 - openssl >=3.3.2,<4.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -5683,8 +5506,6 @@ packages: - libcurl >=8.10.1,<9.0a0 - libcxx >=17 - openssl >=3.3.2,<4.0a0 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -5698,8 +5519,6 @@ packages: - libcurl >=8.10.1,<9.0a0 - libcxx >=17 - openssl >=3.3.2,<4.0a0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -5714,8 +5533,6 @@ packages: - libgcc >=13 - libstdcxx >=13 - openssl >=3.3.2,<4.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -5729,8 +5546,6 @@ packages: - azure-core-cpp >=1.14.0,<1.14.1.0a0 - libcxx >=17 - openssl >=3.3.2,<4.0a0 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -5744,8 +5559,6 @@ packages: - azure-core-cpp >=1.14.0,<1.14.1.0a0 - libcxx >=17 - openssl >=3.3.2,<4.0a0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -5760,8 +5573,6 @@ packages: - azure-storage-common-cpp >=12.8.0,<12.8.1.0a0 - libgcc >=13 - libstdcxx >=13 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -5775,8 +5586,6 @@ packages: - azure-core-cpp >=1.14.0,<1.14.1.0a0 - azure-storage-common-cpp >=12.8.0,<12.8.1.0a0 - libcxx >=17 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -5790,8 +5599,6 @@ packages: - azure-core-cpp >=1.14.0,<1.14.1.0a0 - azure-storage-common-cpp >=12.8.0,<12.8.1.0a0 - libcxx >=17 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -5807,8 +5614,6 @@ packages: - libstdcxx >=13 - libxml2 >=2.12.7,<3.0a0 - openssl >=3.3.2,<4.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -5823,8 +5628,6 @@ packages: - libcxx >=17 - libxml2 >=2.12.7,<3.0a0 - openssl >=3.3.2,<4.0a0 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -5839,8 +5642,6 @@ packages: - libcxx >=17 - libxml2 >=2.12.7,<3.0a0 - openssl >=3.3.2,<4.0a0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -5856,8 +5657,6 @@ packages: - azure-storage-common-cpp >=12.8.0,<12.8.1.0a0 - libgcc >=13 - libstdcxx >=13 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -5872,8 +5671,6 @@ packages: - azure-storage-blobs-cpp >=12.13.0,<12.13.1.0a0 - azure-storage-common-cpp >=12.8.0,<12.8.1.0a0 - libcxx >=17 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -5888,8 +5685,6 @@ packages: - azure-storage-blobs-cpp >=12.13.0,<12.13.1.0a0 - azure-storage-common-cpp >=12.8.0,<12.8.1.0a0 - libcxx >=17 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -5953,8 +5748,6 @@ packages: - platformdirs >=2 - python >=3.11,<3.12.0a0 - python_abi 3.11.* *_cp311 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: @@ -5972,8 +5765,6 @@ packages: - platformdirs >=2 - python >=3.11,<3.12.0a0 - python_abi 3.11.* *_cp311 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: @@ -5992,8 +5783,6 @@ packages: - python >=3.11,<3.12.0a0 - python >=3.11,<3.12.0a0 *_cpython - python_abi 3.11.* *_cp311 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: @@ -6011,8 +5800,6 @@ packages: - platformdirs >=2 - python >=3.11,<3.12.0a0 - python_abi 3.11.* *_cp311 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: @@ -6054,8 +5841,6 @@ packages: - lz4-c >=1.10.0,<1.11.0a0 - snappy >=1.2.1,<1.3.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: x86_64 - platform: linux license: BSD-3-Clause license_family: BSD purls: [] @@ -6071,8 +5856,6 @@ packages: - lz4-c >=1.10.0,<1.11.0a0 - snappy >=1.2.1,<1.3.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: x86_64 - platform: osx license: BSD-3-Clause license_family: BSD purls: [] @@ -6088,8 +5871,6 @@ packages: - lz4-c >=1.10.0,<1.11.0a0 - snappy >=1.2.1,<1.3.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: arm64 - platform: osx license: BSD-3-Clause license_family: BSD purls: [] @@ -6106,8 +5887,6 @@ packages: - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - zstd >=1.5.6,<1.6.0a0 - arch: x86_64 - platform: win license: BSD-3-Clause license_family: BSD purls: [] @@ -6142,8 +5921,6 @@ packages: - numpy >=1.21,<3 - python >=3.11,<3.12.0a0 - python_abi 3.11.* *_cp311 - arch: x86_64 - platform: linux license: BSD-2-Clause license_family: BSD purls: @@ -6158,8 +5935,6 @@ packages: - numpy >=1.21,<3 - python >=3.11,<3.12.0a0 - python_abi 3.11.* *_cp311 - 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__glibc >=2.17,<3.0.a0 - libgcc >=13 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26184,8 +23171,6 @@ packages: depends: - __glibc >=2.17,<3.0.a0 - libgcc >=13 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26196,8 +23181,6 @@ packages: md5: d894608e2c18127545d67a096f1b4bab depends: - __osx >=10.13 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26208,8 +23191,6 @@ packages: md5: daf3b34253eea046c9ab94e0c3b2f83d depends: - __osx >=11.0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26223,8 +23204,6 @@ packages: - libwinpthread >=12.0.0.r4.gg4f2fc60ca - ucrt >=10.0.20348.0 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26238,8 +23217,6 @@ packages: - libgcc >=13 - libuuid >=2.38.1,<3.0a0 - xorg-libice >=1.1.2,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26251,8 +23228,6 @@ packages: depends: - __osx >=10.13 - xorg-libice >=1.1.2,<2.0a0 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26264,8 +23239,6 @@ packages: depends: - __osx >=11.0 - xorg-libice >=1.1.2,<2.0a0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26279,8 +23252,6 @@ packages: - libwinpthread >=12.0.0.r4.gg4f2fc60ca - ucrt >=10.0.20348.0 - xorg-libice >=1.1.1,<2.0a0 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26293,8 +23264,6 @@ packages: - __glibc >=2.17,<3.0.a0 - libgcc >=13 - libxcb >=1.17.0,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26306,8 +23275,6 @@ packages: depends: - __osx >=10.13 - libxcb >=1.17.0,<2.0a0 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26319,8 +23286,6 @@ packages: depends: - __osx >=11.0 - libxcb >=1.17.0,<2.0a0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26334,8 +23299,6 @@ packages: - libwinpthread >=12.0.0.r4.gg4f2fc60ca - libxcb >=1.17.0,<2.0a0 - ucrt >=10.0.20348.0 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26347,8 +23310,6 @@ packages: depends: - __glibc >=2.17,<3.0.a0 - libgcc >=13 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26359,8 +23320,6 @@ packages: md5: 4cf40e60b444d56512a64f39d12c20bd depends: - __osx >=10.13 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26371,8 +23330,6 @@ packages: md5: 50901e0764b7701d8ed7343496f4f301 depends: - __osx >=11.0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26385,8 +23342,6 @@ packages: - libgcc >=13 - libwinpthread >=12.0.0.r4.gg4f2fc60ca - ucrt >=10.0.20348.0 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26400,8 +23355,6 @@ packages: - libgcc >=13 - xorg-libx11 >=1.8.10,<2.0a0 - xorg-libxfixes >=6.0.1,<7.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26416,8 +23369,6 @@ packages: - xorg-libx11 >=1.8.10,<2.0a0 - xorg-libxfixes >=6.0.1,<7.0a0 - xorg-libxrender >=0.9.11,<0.10.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26432,8 +23383,6 @@ packages: - xorg-libx11 >=1.8.10,<2.0a0 - xorg-libxext >=1.3.6,<2.0a0 - xorg-libxfixes >=6.0.1,<7.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26445,8 +23394,6 @@ packages: depends: - __glibc >=2.17,<3.0.a0 - libgcc >=13 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26457,8 +23404,6 @@ packages: md5: 9f438e1b6f4e73fd9e6d78bfe7c36743 depends: - __osx >=10.13 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26469,8 +23414,6 @@ packages: md5: 77c447f48cab5d3a15ac224edb86a968 depends: - __osx >=11.0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26483,8 +23426,6 @@ packages: - libgcc >=13 - libwinpthread >=12.0.0.r4.gg4f2fc60ca - ucrt >=10.0.20348.0 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26497,8 +23438,6 @@ packages: - __glibc >=2.17,<3.0.a0 - libgcc >=13 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26510,8 +23449,6 @@ packages: depends: - __osx >=10.13 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26523,8 +23460,6 @@ packages: depends: - __osx >=11.0 - xorg-libx11 >=1.8.10,<2.0a0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26538,8 +23473,6 @@ packages: - libwinpthread >=12.0.0.r4.gg4f2fc60ca - ucrt >=10.0.20348.0 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26552,8 +23485,6 @@ packages: - __glibc >=2.17,<3.0.a0 - libgcc >=13 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26565,8 +23496,6 @@ packages: depends: - __osx >=10.13 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26578,8 +23507,6 @@ packages: depends: - __osx >=11.0 - xorg-libx11 >=1.8.10,<2.0a0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26593,8 +23520,6 @@ packages: - libwinpthread >=12.0.0.r4.gg4f2fc60ca - ucrt >=10.0.20348.0 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26609,8 +23534,6 @@ packages: - xorg-libx11 >=1.8.10,<2.0a0 - xorg-libxext >=1.3.6,<2.0a0 - xorg-libxfixes >=6.0.1,<7.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26625,8 +23548,6 @@ packages: - libstdcxx >=13 - xorg-libx11 >=1.8.10,<2.0a0 - xorg-libxext >=1.3.6,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26641,8 +23562,6 @@ packages: - xorg-libx11 >=1.8.10,<2.0a0 - xorg-libxext >=1.3.6,<2.0a0 - xorg-libxt >=1.3.0,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26658,8 +23577,6 @@ packages: - xorg-libx11 >=1.8.10,<2.0a0 - xorg-libxext >=1.3.6,<2.0a0 - xorg-libxt >=1.3.0,<2.0a0 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26674,8 +23591,6 @@ packages: - xorg-libx11 >=1.8.10,<2.0a0 - xorg-libxext >=1.3.6,<2.0a0 - xorg-libxrender >=0.9.11,<0.10.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26688,8 +23603,6 @@ packages: - __glibc >=2.17,<3.0.a0 - libgcc >=13 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26701,8 +23614,6 @@ packages: depends: - __osx >=10.13 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26714,8 +23625,6 @@ packages: depends: - __osx >=11.0 - xorg-libx11 >=1.8.10,<2.0a0 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26729,8 +23638,6 @@ packages: - libwinpthread >=12.0.0.r4.gg4f2fc60ca - ucrt >=10.0.20348.0 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26745,8 +23652,6 @@ packages: - xorg-libice >=1.1.1,<2.0a0 - xorg-libsm >=1.2.4,<2.0a0 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26762,8 +23667,6 @@ packages: - xorg-libice >=1.1.1,<2.0a0 - xorg-libsm >=1.2.4,<2.0a0 - xorg-libx11 >=1.8.10,<2.0a0 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26778,8 +23681,6 @@ packages: - xorg-libx11 >=1.8.10,<2.0a0 - xorg-libxext >=1.3.6,<2.0a0 - xorg-libxi >=1.7.10,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26793,8 +23694,6 @@ packages: - libgcc >=13 - xorg-libx11 >=1.8.10,<2.0a0 - xorg-libxext >=1.3.6,<2.0a0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26837,8 +23736,6 @@ packages: md5: 4cb3ad778ec2d5a7acbdf254eb1c42ae depends: - libgcc-ng >=9.4.0 - arch: x86_64 - platform: linux license: MIT license_family: MIT purls: [] @@ -26847,8 +23744,6 @@ packages: - conda: https://conda.anaconda.org/conda-forge/osx-64/yaml-0.2.5-h0d85af4_2.tar.bz2 sha256: 5301417e2c8dea45b401ffee8df3957d2447d4ce80c83c5ff151fc6bfe1c4148 md5: d7e08fcf8259d742156188e8762b4d20 - arch: x86_64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26857,8 +23752,6 @@ packages: - conda: https://conda.anaconda.org/conda-forge/osx-arm64/yaml-0.2.5-h3422bc3_2.tar.bz2 sha256: 93181a04ba8cfecfdfb162fc958436d868cc37db504c58078eab4c1a3e57fbb7 md5: 4bb3f014845110883a3c5ee811fd84b4 - arch: arm64 - platform: osx license: MIT license_family: MIT purls: [] @@ -26870,8 +23763,6 @@ packages: depends: - vc >=14.1,<15.0a0 - vs2015_runtime >=14.16.27012 - arch: x86_64 - platform: win license: MIT license_family: MIT purls: [] @@ -26888,8 +23779,6 @@ packages: - propcache >=0.2.1 - python >=3.11,<3.12.0a0 - python_abi 3.11.* *_cp311 - arch: x86_64 - platform: linux license: Apache-2.0 license_family: Apache purls: @@ -26906,8 +23795,6 @@ packages: - propcache >=0.2.1 - python >=3.11,<3.12.0a0 - python_abi 3.11.* *_cp311 - arch: x86_64 - platform: osx license: Apache-2.0 license_family: Apache purls: @@ -26925,8 +23812,6 @@ packages: - python >=3.11,<3.12.0a0 - python >=3.11,<3.12.0a0 *_cpython - python_abi 3.11.* *_cp311 - arch: arm64 - platform: osx license: Apache-2.0 license_family: Apache purls: @@ -26945,8 +23830,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Apache-2.0 license_family: Apache purls: @@ -26980,8 +23863,6 @@ packages: - libgcc >=13 - libsodium >=1.0.20,<1.0.21.0a0 - libstdcxx >=13 - arch: x86_64 - platform: linux license: MPL-2.0 license_family: MOZILLA purls: [] @@ -26995,8 +23876,6 @@ packages: - krb5 >=1.21.3,<1.22.0a0 - libcxx >=18 - libsodium >=1.0.20,<1.0.21.0a0 - arch: x86_64 - platform: osx license: MPL-2.0 license_family: MOZILLA purls: [] @@ -27010,8 +23889,6 @@ packages: - krb5 >=1.21.3,<1.22.0a0 - libcxx >=18 - libsodium >=1.0.20,<1.0.21.0a0 - arch: arm64 - platform: osx license: MPL-2.0 license_family: MOZILLA purls: [] @@ -27026,8 +23903,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: MPL-2.0 license_family: MOZILLA purls: [] @@ -27062,8 +23937,6 @@ packages: - __glibc >=2.17,<3.0.a0 - libgcc >=13 - libzlib 1.3.1 hb9d3cd8_2 - arch: x86_64 - platform: linux license: Zlib license_family: Other purls: [] @@ -27075,8 +23948,6 @@ packages: depends: - __osx >=10.13 - libzlib 1.3.1 hd23fc13_2 - arch: x86_64 - platform: osx license: Zlib license_family: Other purls: [] @@ -27088,8 +23959,6 @@ packages: depends: - __osx >=11.0 - libzlib 1.3.1 h8359307_2 - arch: arm64 - platform: osx license: Zlib license_family: Other purls: [] @@ -27103,8 +23972,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: Zlib license_family: Other purls: [] @@ -27121,8 +23988,6 @@ packages: - python_abi 3.11.* *_cp311 - zstd >=1.5.6,<1.5.7.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: x86_64 - platform: linux license: BSD-3-Clause license_family: BSD purls: @@ -27139,8 +24004,6 @@ packages: - python_abi 3.11.* *_cp311 - zstd >=1.5.6,<1.5.7.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: x86_64 - platform: osx license: BSD-3-Clause license_family: BSD purls: @@ -27158,8 +24021,6 @@ packages: - python_abi 3.11.* *_cp311 - zstd >=1.5.6,<1.5.7.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: arm64 - platform: osx license: BSD-3-Clause license_family: BSD purls: @@ -27178,8 +24039,6 @@ packages: - vc14_runtime >=14.29.30139 - zstd >=1.5.6,<1.5.7.0a0 - zstd >=1.5.6,<1.6.0a0 - arch: x86_64 - platform: win license: BSD-3-Clause license_family: BSD purls: @@ -27193,8 +24052,6 @@ packages: - libgcc-ng >=12 - libstdcxx-ng >=12 - libzlib >=1.2.13,<2.0.0a0 - arch: x86_64 - platform: linux license: BSD-3-Clause license_family: BSD purls: [] @@ -27206,8 +24063,6 @@ packages: depends: - __osx >=10.9 - libzlib >=1.2.13,<2.0.0a0 - arch: x86_64 - platform: osx license: BSD-3-Clause license_family: BSD purls: [] @@ -27219,8 +24074,6 @@ packages: depends: - __osx >=11.0 - libzlib >=1.2.13,<2.0.0a0 - arch: arm64 - platform: osx license: BSD-3-Clause license_family: BSD purls: [] @@ -27234,8 +24087,6 @@ packages: - ucrt >=10.0.20348.0 - vc >=14.2,<15 - vc14_runtime >=14.29.30139 - arch: x86_64 - platform: win license: BSD-3-Clause license_family: BSD purls: [] diff --git a/pixi.toml b/pixi.toml index 1801c8889..58e8087d5 100644 --- a/pixi.toml +++ b/pixi.toml @@ -128,6 +128,7 @@ vtk = { version = ">=9.0", build = "*qt*" } xarray = ">=2023.08.0" xugrid = ">=0.11.0" zarr = "*" +pytest-timeout = ">=2.3.1,<3" [pypi-dependencies] mypy2junit = "*"