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lines changed Original file line number Diff line number Diff line change 88prefix=` dirname $( readlink $0 || echo $0 ) `
99
1010# Check whether or not to use the bundled JDK
11- if [ -d " ${prefix} /jdk-11" ]; then
11+ if [ -d " ${prefix} /../ jdk-11" ]; then
1212 echo echo " Using bundled JDK."
13- JAVA_HOME=" ${prefix} /jdk-11"
14- PATH=$JAVA_HOME :$PATH
13+ JAVA_HOME=" ${prefix} /../ jdk-11"
14+ PATH=$JAVA_HOME /bin :$PATH
1515else
1616 echo " Bundled JDK not found. Using system JDK."
1717fi
@@ -21,4 +21,5 @@ exec java --module-path="${prefix}/../Java/lib" -Xmx4g \
2121 --patch-module=" jide.common=${prefix} /../Java/lib/jide-components-3.7.4.jar:${prefix} /../Java/lib/jide-dock-3.7.4.jar:${prefix} /../Java/lib/jide-grids-3.7.4.jar" \
2222 -Xdock:name=" MSigDB XML Browser" \
2323 -Xdock:icon=" ${prefix} /../Resources/msigdb.png" \
24+ -Dapple.laf.useScreenMenuBar=true \
2425 --module=org.gsea-msigdb.gsea/xapps.browser.gsea.MSigDB_XML_Browser " $@ "
Original file line number Diff line number Diff line change @@ -10,7 +10,7 @@ prefix=`dirname $(readlink $0 || echo $0)`
1010if [ -d " ${prefix} /jdk-11" ]; then
1111 echo echo " Using bundled JDK."
1212 JAVA_HOME=" ${prefix} /jdk-11"
13- PATH=$JAVA_HOME :$PATH
13+ PATH=$JAVA_HOME /bin :$PATH
1414else
1515 echo " Bundled JDK not found. Using system JDK."
1616fi
@@ -19,4 +19,5 @@ exec java --module-path="${prefix}/lib" -Xmx4g \
1919 @" ${prefix} /msigdb-xml-browser.args" \
2020 --patch-module=" jide.common=${prefix} /lib/jide-components-3.7.4.jar:${prefix} /lib/jide-dock-3.7.4.jar:${prefix} /lib/jide-grids-3.7.4.jar" \
2121 -Dsun.java2d.uiScale=2 \
22+ -Dapple.laf.useScreenMenuBar=true \
2223 --module=org.gsea-msigdb.gsea/xapps.browser.gsea.MSigDB_XML_Browser " $@ "
Original file line number Diff line number Diff line change @@ -11,7 +11,7 @@ prefix=`dirname $(readlink $0 || echo $0)`
1111if [ -d " ${prefix} /jdk-11" ]; then
1212 echo echo " Using bundled JDK."
1313 JAVA_HOME=" ${prefix} /jdk-11"
14- PATH=$JAVA_HOME :$PATH
14+ PATH=$JAVA_HOME /bin :$PATH
1515else
1616 echo " Bundled JDK not found. Using system JDK."
1717fi
@@ -21,4 +21,5 @@ exec java --module-path="${prefix}/lib" -Xmx4g \
2121 --patch-module=" jide.common=${prefix} /lib/jide-components-3.7.4.jar:${prefix} /lib/jide-dock-3.7.4.jar:${prefix} /lib/jide-grids-3.7.4.jar" \
2222 -Xdock:name=" MSigDB XML Browser" \
2323 -Xdock:icon=" ${prefix} /msigdb.png" \
24+ -Dapple.laf.useScreenMenuBar=true \
2425 --module=org.gsea-msigdb.gsea/xapps.browser.gsea.MSigDB_XML_Browser " $@ "
Original file line number Diff line number Diff line change @@ -10,12 +10,13 @@ prefix=`dirname $(readlink $0 || echo $0)`
1010if [ -d " ${prefix} /jdk-11" ]; then
1111 echo echo " Using bundled JDK."
1212 JAVA_HOME=" ${prefix} /jdk-11"
13- PATH=$JAVA_HOME :$PATH
13+ PATH=$JAVA_HOME /bin :$PATH
1414else
1515 echo " Bundled JDK not found. Using system JDK."
1616fi
1717
1818exec java --module-path=" ${prefix} /lib" -Xmx4g \
1919 @" ${prefix} /msigdb-xml-browser.args" \
2020 --patch-module=" jide.common=${prefix} /lib/jide-components-3.7.4.jar:${prefix} /lib/jide-dock-3.7.4.jar:${prefix} /lib/jide-grids-3.7.4.jar" \
21+ -Dapple.laf.useScreenMenuBar=true \
2122 --module org.gsea-msigdb.gsea/xapps.browser.gsea.MSigDB_XML_Browser " $@ "
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