This directory contains two example data for the SEEG plugin for IBIS.
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Download or clone the repository on your local computer
1.1.
git clone https://github.com/IbisNeuronav/IbisExampleData.git -
Download binary files "IbisSEEGAtlas1.0.x.zip" of IBIS with the SEEG plugin here: https://github.com/IbisNeuronav/IbisPluginsExtraSEEG/releases/tag/v1.0
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Unzip the files in a local directory and run "IbisSEEGAtlas1.0.x\ibis.exe"
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(optional) Copy the configuration files:
4.1. Download config files here: https://github.com/IbisNeuronav/IbisPluginsExtraSEEG/releases/download/v1.0/SEEGAtlasData.zip
4.2. Unzip the files into "C:\Users\<your_username>\.Ibis\SEEGAtlasData":
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<your_username> refers to your windows username
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if the directory ".Ibis" doesn't exist, create an empty directory with this name or run Ibis once (it will be automatically created)
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Once Ibis is running with the SEEGAtlas plugin, clic on "Load MRI/CT From Dir" on the top of the right pannel, and select the directory of the example you want to load. Different options are possible:
5.1. If "Segmentations (pre-space)" is selected: pre-implentation image with the associated atlas labelmap will be loaded
5.2. If "Template" is selected:
5.3. If "Electrodes (pos-space)" is selected: post-implentation data are loaded
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To load electrodes, use "Load All Electrodes" button and select "\SEEGAtlasExample\<Example>\electrodes" directory