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Hello! Thank you for building this awesome package.
I'm trying to visualize some odds-ratios and their confidence intervals, and I'm running into an issue where the top of the plot seems to get cut off.
I installed forestplot today via conda with conda install -c conda-forge forestplot, and am running it on Python 3.9.6.
Data
>>> df
varname or low high
0 a 1.761471 0.926563 3.022285
1 b 1.443660 0.517059 3.130794
2 c 1.525227 0.603459 3.082003
3 d 0.895682 0.463703 1.660016
4 e 4.025670 1.196941 8.932753
5 f 1.086105 0.555171 2.045735
Plotting code
fp.forestplot(df, # the dataframe with results data
estimate='or', # col containing estimated effect size
ll='low', hl='high', # columns containing conf. int. lower and higher limits
varlabel='varname', # column containing variable label
ylabel='Confidence interval', # y-label title
xlabel='Odds Ratio', # x-label title
color_alt_rows=True,
figsize=(4,8),
**{
'xline' : 1.,
"xlinestyle": (0, (10, 5)), # long dash for x-reference line
}
)
plt.savefig('test_forest_plot.png', bbox_inches='tight')
What I'm seeing is the attached image, where the top of the plot (where variable "a" should be) is getting cut off. I've tried adjusting the plot size but the issue persists. Any insight or advice would be appreciated!
