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Commits on Dec 6, 2018

• removing the script in generating rgstack example

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• remove preprocessing of rgstack file out into inst/extdata, hope to save time

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Commits on Dec 5, 2018

• addressing check notes

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• bump version to catch the VariantAnnotation-1.29.3

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Commits on Dec 4, 2018

• bump version for package review

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Commits on Dec 3, 2018

• now depending on VariantAnnotation 1.29.3 to work for the remote vcf filepath

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• reordering the argument check to fail as early as possible

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• VCFArraySeed now works for remote VCF filepath

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Commits on Nov 30, 2018

• modify github repo in github installation section

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Commits on Nov 28, 2018

• removed todo.Rmd, saved inside fork in Liubuntu

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• cleaning up comments, adding edge cases for ifelse statement

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Commits on Nov 1, 2018

• don't examples of rgstack to save checking time.

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Commits on Oct 24, 2018

• git rm VCFArray.Rproj

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• adding VCFArray.Rproj into .gitignore

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• redo the rgstack example to clear the building error

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Commits on Oct 19, 2018

• test vignette in building error.

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• check if exist the file path that are downloaded inside vignette.

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Commits on Oct 18, 2018

• moving meta column pos in @gr out as a slot.

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Commits on Oct 17, 2018

• updated pkg versions of VariantAnnotation ans GenomicFiles for vcfFields()

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Commits on Oct 15, 2018

• removed availableNames() from package

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Commits on Sep 5, 2018

• Removed "availableNames()" function. Now using VariantAnnotation::vcfFields().

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Commits on Aug 24, 2018

• pull request to 'VariantAnnotation' for 'vcfFields,VcfFile-method'.

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• renaming 'rgstack.rda' as 'rgstack.rds'

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  3b35907

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• update todo list. feature request for DelayedArray(List)

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• italialize Bioconductor in README

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• updated NEWS, README, and DESCRIPTION files.

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  ba4f471

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• Now VCFArray works with DelayedArray::type()

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Commits on Aug 23, 2018

• replaced eval(parse(text = funcName)) by get(funcName) in package.

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• VCFArraySeed slots update and extra checking.

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• more efficient code

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• minor tweaks for BiocCheck().

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• reorganized package tree and passed check.

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• fixed NAMESPACE by importing Rsamtools

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• Finished the vignette.

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• fixed bugs in VCFArraySeed constructor for argument name and check.

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