raw/

.raw/

.zulip/

.DS_Store

# Only Project.toml is committed (the dependency contract). Manifest.toml is

# platform/version-pinned (see `julia_version` field) and would break

# cross-machine syncing — each environment resolves its own Manifest from

# Project.toml on first instantiate.

julia-env/Manifest.toml

julia-env/.CondaPkg/

.julia/

.knowledge/literature/**/.raw/

.knowledge/literature/**/.figures/

tracks/**/.raw/

tracks/**/.figures/

tracks/**/results/

# Per-method JSON manifests are derived from .knowledge/literature/ref.bib

# via skills/download-ref/helpers/bibtex_to_manifest.py — don't sync.

.knowledge/literature/manifests/

# Managed by ion

skills/ion-cli

.claude/skills/

CLAUDE.md

# Claude runtime state

.claude/scheduled_tasks.lock

.claude/cache/

scripts/_*

/results/

/tmp/

/.external/

.venv-tenpy/

.pytest_cache/

.coverage

__pycache__/

target/

.superpowers/

.claude/skills/ion-cli

skills/receiving-code-review

.claude/skills/receiving-code-review

skills/requesting-code-review

.claude/skills/requesting-code-review

skills/using-git-worktrees

.claude/skills/using-git-worktrees

skills/brainstorming

.claude/skills/brainstorming

skills/dispatching-parallel-agents

.claude/skills/dispatching-parallel-agents

skills/executing-plans

.claude/skills/executing-plans

skills/finishing-a-development-branch

.claude/skills/finishing-a-development-branch

skills/subagent-driven-development

.claude/skills/subagent-driven-development

skills/systematic-debugging

.claude/skills/systematic-debugging

skills/test-driven-development

.claude/skills/test-driven-development

skills/using-superpowers

.claude/skills/using-superpowers

skills/verification-before-completion

.claude/skills/verification-before-completion

skills/writing-plans

.claude/skills/writing-plans

skills/writing-skills

.claude/skills/writing-skills

skills/scientific-visualization

.claude/skills/scientific-visualization

docs/superpowers/

skills/arxiv-search

skills/survey

# Git worktrees

.worktrees/

skills/polyopt-guide

skills/idea-writer

skills/ideas