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Commits on Jun 5, 2024

• remove the unnecessary hashSize checking

  XiaomingXu1995

  committed
  2be3294

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Commits on Nov 17, 2023

• update the citation

  XiaomingXu1995

  authored
  1731888

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Commits on May 6, 2023

• Update the LICENSE

  XiaomingXu1995

  authored
  0d51448

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Commits on Apr 17, 2023

• Update the README and LICENSE

  XiaomingXu1995

  authored
  175397c

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Commits on Apr 11, 2023

• update the init_shuffle.sh, pipeSketch.sh, remove unused-result warning

  XiaomingXu1995

  committed
  0bc8f8e

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Commits on Mar 30, 2023

• clean up the code to reduce the compiling warning and update the install.sh

  XiaomingXu1995

  committed
  2d820eb

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Commits on Mar 14, 2023

• add the hash64 support for sub-command union

  XiaomingXu1995

  committed
  6cc70c3

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• add hash64 support for sub-command merge

  XiaomingXu1995

  committed
  6603ad0

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• add hash64 support for sub-command sub (subtraction)

  XiaomingXu1995

  committed
  347ce70

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Commits on Mar 13, 2023

• update submodule RabbitFX

  XiaomingXu1995

  committed
  1ae17c9

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Commits on Mar 12, 2023

• add support hash64 for fastq file; add sketchSize=0 check for jaccard and containment computation

  XiaomingXu1995

  committed
  ae84008

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• manual merge from dev_map_retrieve_hash for support 64-bit hashes on FASTA

  XiaomingXu1995

  committed
  0c9d173

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Commits on Mar 9, 2023

• support input FASTA and FASTQ gz format for sketching

  XiaomingXu1995

  committed
  38debbc

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Commits on Mar 7, 2023

• fixed the nullptr when using no comment fasta format input

  XiaomingXu1995

  committed
  92660e0

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Commits on Mar 6, 2023

• update the task partition of big and small genome file

  XiaomingXu1995

  committed
  0d23d17

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Commits on Mar 1, 2023

• add the license

  XiaomingXu1995

  committed
  4c6736b

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• add shuffle of uint32_t bit-check for half_k and drlevel

  XiaomingXu1995

  committed
  57fe533

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• add the least quality score filter for fastq file

  XiaomingXu1995

  committed
  b72d9fc

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Commits on Feb 26, 2023

• update README.md

  XiaomingXu1995

  authored
  891fc68

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Commits on Feb 24, 2023

• Update README.md

  ZekunYin

  authored
  d5ee8a7

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• update README

  XiaomingXu1995

  authored
  56bcdbd

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Commits on Feb 23, 2023

• update README

  XiaomingXu1995

  authored
  178e9a3

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• fixed the bugs in index_dist segment fault, update init_shuffle.sh, add id in sketchInfo_t struct

  XiaomingXu1995

  committed
  b86cc1b

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Commits on Feb 22, 2023

• add sub-command of shuffle, add init_shuffle.sh, change the execute file name from kssd to rabbit_kssd

  XiaomingXu1995

  committed
  24f1810

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Commits on Feb 20, 2023

• add streamed write the result sketch file of set substraction operation

  XiaomingXu1995

  committed
  27a1c5d

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Commits on Feb 19, 2023

• add producer(reader sketch file) and consumer(subtract hash set) for set substraction sub-command

  

  xiaomingxu1995

  committed
  11d1b2d

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Commits on Feb 18, 2023

• update the convert Sketch between RabbitKSSD and Kssd, change the parameter in reference format to reduce memory usage, update transSketch with multithreads

  XiaomingXu1995

  committed
  fff5f4d

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Commits on Feb 12, 2023

• fixed the alldist and dist bugs of lossing index and dictionary sketch files when input as genome list

  XiaomingXu1995

  committed
  1aacb0b

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Commits on Feb 8, 2023

• reduce the memory usage of readSketches, command_merge, and command_info

  

  xiaomingxu1995

  committed
  f968663

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Commits on Dec 19, 2022

• add pipeline dump and sketching SRA dataset

  XiaomingXu1995

  committed
  0b3ae4a

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Commits on Dec 18, 2022

• add -n option for least frequence of kmer for fastq file, and add merge subcommand for merge multiple sketch files into one sketch file, origin merge subcommand rename union

  XiaomingXu1995

  committed
  1f5c67f

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Commits on Dec 14, 2022

• add -N parameter to set the maximum number of nearest neighbor reference

  XiaomingXu1995

  committed
  a372992

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Commits on Dec 9, 2022

• remove the sorted hash value in sketches operation

  XiaomingXu1995

  committed
  e299c6c

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Commits on Dec 7, 2022

• remove the sorting of sketches values and index, need checkRabbitKSSD script for check sketch rather than md5sum

  XiaomingXu1995

  committed
  3e5dd47

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Commits on Dec 5, 2022

• update sketch input format and add info -F option

  

  xiaomingxu1995

  committed
  c4a8bcf

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