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Merge pull request #948 from vkbo/doc_fixes
Doc fixes
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README.md

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@@ -64,7 +64,8 @@ In applying this licence, CERN does not waive the privileges and immunities gran
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## Quick Build
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To build the standard release version of SixTrack with default options, run the script `defaultBuild.sh`.
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To build the standard release version of SixTrack, run the script `cmake_six` with no additional options.
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This will build the SixTrack 64 bit executable with the singletrackfile, zlib support, as well as the crlibm math library.
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## Resources
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doc/build_sixtrack.md

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### Options Enabled by Default
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* **TILT**: Allow elements to be tilted (by error
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* **FAST**: Which implementation of drifts to use in thin6d
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* **TILT**: Allow elements to be tilted (by error)
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* **CRLIBM**: Use correctly rounded libmath instead of system libmath
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* **SIXDA**: Build differential algebra version (NOT dynamic aperture!)
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* **STF**: Single Track File. Write all tracks for postprocessing to singletrackfile.dat instead of 32 separate files (fort.59 - fort.90). This option is required for more than 64 particles.
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* **ZLIB**: Link with zlib and minizip, and is required for BOINC and the ZIPF.
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* **NAFF**: Link to external NAFFlib for FMA.
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* **DISTLIB**: Link to external DISTlib for the beam distribution.
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* **HASHLIB**: Build the md5 hash library (used for tests and BOINC).
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### Options Disabled by Default
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* **BUILD_TESTING**: Enable the test suite.
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* **BOINC**: Builds BOINC version of SixTrack.
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* **CR** Enables checkpoint/restart support. Required for BOINC.
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* **LIBARCHIVE**: Link with LIBARCHIVE, and is required for BOINC and ZIPF block if ZIPF is off.
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* **ZLIB**: Link with zlib and minizip, and is required for BOINC and the ZIPF block if LIBARCHIVE is off.
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* **BEAMGAS**: Beam-gas scattering.
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* **FIO**: Use FortranIO from Fortran2003 to correctly round ASCII input/output. this option overrides CRLIBM when reading/writing.
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* **CERNLIB**: Link to external CERNLIB library for PAW plots. Otherwise use internally defined dummy functions.
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* **HDF5**: Adds support for the HDF5 block which enables writing output to a single HDF5 file.
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* **ROOT**: Adds support for writing to ROOT files. Experimental and undocumented.
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* **MERLINSCATTER**: Interaction physics for collimation from Merlin.
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* **G4COLLIMAT**: Interaction physics for collimation from Geant4.
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* **G4COLLIMATION**: Interaction physics for collimation from Geant4.
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* **FLUKA**: Couple to FLUKA for beam collimation.
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* **PYTHIA**: Link with Pythia8 for SCATTER module.
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### Binary Type
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doc/old-SixTest-README.txt

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doc/user_manual/chInitialConditions.tex

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@@ -49,7 +49,7 @@ \section{Simulation Parameters} \label{Input:SIMU}
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\setlength\LTleft{0pt}
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\setlength\LTright{0pt}
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\begin{longtable}{@{\extracolsep{\fill}}|l|p{10cm}|l|}
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\caption{Available arguents in the SIMU block.}
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\caption{Available arguments in the SIMU block.}
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\label{Table:SIMU} \\*
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\hline
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\rowcolor{blue!30}
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\texttt{INT} & \texttt{value [first last]} \\*
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\hline
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\multicolumn{2}{|>{\raggedright}p{\textwidth}|}{%
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Sets all values to a fixed integer.\\
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Sets all values to a fixed integer.
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Can be used with column formats \texttt{ION\_A}, \texttt{ION\_Z}, \texttt{CHARGE} and \texttt{PDGID}.
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} \\*
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\hline
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\texttt{FLOAT} & \texttt{value [first last]} \\*
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\hline
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\multicolumn{2}{|>{\raggedright}p{\textwidth}|}{%
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Sets all values to a fixed floating point value.\\
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Sets all values to a fixed floating point value.
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Can be used with all floating point column formats.
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} \\*
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\hline
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\texttt{GAUSS} & \texttt{sigma mu [cut] [first last]} \\*
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\multicolumn{2}{|>{\raggedright}p{\textwidth}|}{%
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Generates a normal random distribution with width \texttt{sigma} and offset \texttt{mu}, with an optional sigma \texttt{cut}.\\
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Generates a normal random distribution with width \texttt{sigma} and offset \texttt{mu}, with an optional sigma \texttt{cut}.
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Can be used with all floating point column formats except \texttt{MASS}.
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} \\*
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\texttt{UNIFORM} & \texttt{lower upper [first last]} \\*
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\multicolumn{2}{|>{\raggedright}p{\textwidth}|}{%
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Generates a uniform random distribution between the values \texttt{lower} and \texttt{upper}.\\
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Generates a uniform random distribution between the values \texttt{lower} and \texttt{upper}.
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Can be used with all floating point column formats except \texttt{MASS}.
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} \\*
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\texttt{LINEAR} & \texttt{lower upper [first last]} \\*
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\multicolumn{2}{|>{\raggedright}p{\textwidth}|}{%
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Fills the array with floating point values ranging between the values \texttt{lower} and \texttt{upper} in equal steps.\\
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Fills the array with floating point values ranging between the values \texttt{lower} and \texttt{upper} in equal steps.
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Can be used with all floating point column formats except \texttt{MASS}.
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} \\*
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\texttt{COUNT} & \texttt{start step [first last]} \\*
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Fills the array with integer values starting from \texttt{start}, with a given \texttt{step}.\\
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Fills the array with integer values starting from \texttt{start}, with a given \texttt{step}.
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Can be used with column format \texttt{ID}.
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} \\*
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\hline

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