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Commits on May 7, 2025

• Update Yeo_lab_internal.md

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• Update oligose_k562.yaml

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• Merge pull request #14 from YeoLab/refactor-tidy

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Commits on Apr 8, 2025

• Cleaned up envs folder.

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• Fixed configuration bug, Prelim lab example

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Commits on Apr 4, 2025

• Updated examples & README.

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Commits on Apr 2, 2025

• dded set seed option for fitting.

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Commits on Apr 1, 2025

• Moved intermediates, updated README.

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Commits on Mar 28, 2025

• Made finemapping optional.

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Commits on Mar 27, 2025

• cleaned up comments

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• Adjusted script names and removed unused scripts.

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Commits on Mar 26, 2025

• adjusted rule names, increased finemap resources

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Commits on Mar 25, 2025

• Removed benchmarking rules, added DMMvsBBM option.

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Commits on Mar 24, 2025

• SE/PE.smk -> Mudskipper.smk, removed defunct .smks

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• Standardized DMM naming convention.

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Commits on Mar 20, 2025

• Removed unused utilities.

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• Removed unused test files.

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Commits on Mar 19, 2025

• Removed all config files except examples

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• Merge pull request #13 from YeoLab/refactor-tidy

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Commits on Mar 17, 2025

• reduced memory request sizes, fixed QC summary bug.

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Commits on Mar 14, 2025

• Adjusted README for better clarity

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Commits on Dec 17, 2024

• fix Brian's questions

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Commits on Dec 16, 2024

• remove unused parameter and add DB_FILE and GENOME_dir

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Commits on May 14, 2024

• Merge pull request #6 from YeoLab/containerize

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• revision changes

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Commits on Mar 21, 2024

• Merge pull request #5 from YeoLab/containerize

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Commits on Mar 13, 2024

• updated dependency with scipy

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Commits on Mar 12, 2024

• fix SCRIPT_PATH/

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• bug fix

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Commits on Mar 11, 2024

• trigger repeat outputs

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• "small bug fix"

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Commits on Jan 19, 2024

• readme update

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• add profile

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• containerize and fix param for SLRUM

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Commits on Jan 16, 2024

• fix checkout branch issue

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