Hi, applying mutate on tbl_tree remains no longer tbl_tree object . And therefore, cannot convert back to tree using as.phylo(). See the example below
tree <- rtree(4)
tree
Phylogenetic tree with 4 tips and 3 internal nodes.
Tip labels:
[1] "t1" "t4" "t3" "t2"
Rooted; includes branch lengths.
as_data_frame(tree) %>% class()
[1] "tbl_tree" "tbl_df" "tbl" "data.frame"
as_data_frame(tree) %>% dplyr::mutate(row_number()) %>% class()
[1] "tbl_df" "tbl" "data.frame"
tree_data <- as_data_frame(tree) %>% dplyr::mutate(row_number())
as.phylo(tree_data)
Error in UseMethod("as.phylo") :
no applicable method for 'as.phylo' applied to an object of class "c('tbl_df', 'tbl', 'data.frame')"
Hi, applying mutate on
tbl_treeremains no longertbl_treeobject . And therefore, cannot convert back to tree usingas.phylo(). See the example below