Merge pull request #25 from afloresep/release/v0.2.1

afloresep · web-flow · commit 5672dfcec271 · 2026-04-30T12:55:35.000+02:00
Release v0.2.1
diff --git a/pyproject.toml b/pyproject.toml
@@ -7,7 +7,7 @@ build-backend = "scikit_build_core.build"
 
 [project]
 name = "tmap2"
-version = "0.2.0"
+version = "0.2.1"
 description = "Tree-based visualization for high-dimensional data"
 readme = "README.md"
 license = {text = "MIT"}
diff --git a/src/tmap/__init__.py b/src/tmap/__init__.py
@@ -50,7 +50,7 @@ def _extend_package_path_for_extensions() -> None:
         subset_anndata,
     )
 
-__version__ = "0.2.0"
+__version__ = "0.2.1"
 
 __all__ = [
     "__version__",
diff --git a/src/tmap/utils/chemistry.py b/src/tmap/utils/chemistry.py
@@ -267,9 +267,7 @@ def _nrings(m):
                 _sum(p_mols, lambda m: m.GetNumHeavyAtoms())
                 - _sum(r_mols, lambda m: m.GetNumHeavyAtoms())
             ),
-            "delta_rings": (
-                _sum(p_mols, _nrings) - _sum(r_mols, _nrings)
-            ),
+            "delta_rings": (_sum(p_mols, _nrings) - _sum(r_mols, _nrings)),
             "delta_aromatic_rings": (
                 _sum(p_mols, rdMolDescriptors.CalcNumAromaticRings)
                 - _sum(r_mols, rdMolDescriptors.CalcNumAromaticRings)
diff --git a/tests/test_minhash.py b/tests/test_minhash.py
@@ -562,9 +562,10 @@ def test_count_vector_workflow(self):
         wmh = WeightedMinHash(dim=100, num_perm=128, seed=42)
 
         # Simulate two documents with word counts
-        doc1 = np.random.uniform(0.1, 10, size=100)
+        rng = np.random.default_rng(42)
+        doc1 = rng.uniform(0.1, 10, size=100)
         doc2 = doc1.copy()
-        doc2[:10] = np.random.uniform(0.1, 10, size=10)  # Modify first 10 words
+        doc2[:10] = rng.uniform(0.1, 10, size=10)  # Modify first 10 words
 
         sig1 = wmh.from_weight_array(doc1)
         sig2 = wmh.from_weight_array(doc2)

Original file line number	Diff line number	Diff line change
`@@ -50,7 +50,7 @@ def _extend_package_path_for_extensions() -> None:`
`50`	`50`	`subset_anndata,`
`51`	`51`	`)`
`52`	`52`
`53`		`-__version__ = "0.2.0"`
	`53`	`+__version__ = "0.2.1"`
`54`	`54`
`55`	`55`	`__all__ = [`
`56`	`56`	`"__version__",`