step-by-step #2

(1)load java and gcc
module load java/1.8.0_60
module load gcc/4.9.3

(2) add the following settings to $HOME/.bashrc, then source $HOME/.bashrc
export PATH=$HOME/packages/bin:$PATH
export LD_LIBRARY_PATH=$HOME/packages/lib:$LD_LIBRARY_PATH
export CFLAGS="-I$HOME/packages/include"
export LDFLAGS="-L$HOME/packages/lib"
export CPLUS_INCLUDE_PATH="$CPLUS_INCLUDE_PATH:$HOME/packages/include"

(3) Install zlib
cd ~/src
wget http://www.zlib.net/zlib-1.2.8.tar.gz
tar -xvzf zlib-1.2.8.tar.gz
cd zlib-1.2.8

  ./configure –prefix=$HOME/packages

  vi Makefile:
  CC= gcc  -fPIC
  original：CFLAGS=-I/nethome/xxs522/packages/include 
  revised：CFLAGS=-I/nethome/xxs522/packages/include  -fPIC

  make
  make install

(4) Install bzlib
cd ~/src
wget http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz
tar xzvf bzip2-1.0.6.tar.gz
cd bzip2-1.0.6

  vi Makefile:
 CC=gcc -fPIC  
 AR=ar
 RANLIB=ranlib
 LDFLAGS=

 BIGFILES=-D_FILE_OFFSET_BITS=64
 CFLAGS=-fPIC -Wall -Winline -O2 -g $(BIGFILES)  

make -f Makefile-libbz2_so
make clean
make
 make -n install PREFIX=$HOME/packages

(5) Install  liblzma
cd ~/src
wget http://tukaani.org/xz/xz-5.2.2.tar.gz
tar xzvf xz-5.2.2.tar.gz
cd xz-5.2.2
./configure --prefix=$HOME/packages
make -j3
make install

(6) Install pcre
cd ~/src
wget ftp://ftp.csx.cam.ac.uk/pub/software/programming/pcre/pcre-8.38.tar.gz

  tar xzvf pcre-8.38.tar.gz
  cd pcre-8.38
  ./configure --enable-utf8 --prefix=$HOME/packages (UTF-8 support  )
   make -j3
   make install

(7) Install libcurl
cd ~/src
wget --no-check-certificate https://curl.haxx.se/download/curl-7.47.1.tar.gz
tar xzvf curl-7.47.1.tar.gz
cd curl-7.47.1
./configure --prefix=$HOME/packages
make -j3
make install

(8) install R-devel
mkdir src
cd src
wget –no-check-certificate https://stat.ethz.ch/CRAN/src/base-prerelease/R-devel_2016-12-11_r71774.tar.gz

   tar xzvf R-devel_2016-12-11_r71774.tar.gz
   cd R-devel

   ./configure --prefix=$HOME/src/R-devel/ --with-cairo  --with-jpeglib --with-readline --with-tcltk  --with-blas --enable-BLAS-shlib --with-lapack --enable-R-profiling '--enable-R-shlib' '--enable-memory-profiling'
   
   make
   make install